BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os04g0355300 Os04g0355300|Os04g0355300
(127 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os04g0355300 Similar to Fatty acyl coA reductase 257 1e-69
Os04g0353600 Similar to Fatty acyl coA reductase 106 5e-24
Os04g0354600 Similar to Acyl CoA reductase-like protein 104 1e-23
Os09g0567500 Similar to Fatty acyl coA reductase 87 2e-18
Os07g0489100 86 1e-17
Os08g0557800 Similar to Fatty acyl coA reductase 80 4e-16
Os03g0167600 Similar to Male sterility protein 2 69 7e-13
>Os04g0355300 Similar to Fatty acyl coA reductase
Length = 127
Score = 257 bits (657), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 127/127 (100%), Positives = 127/127 (100%)
Query: 1 MEPGSIAERFRDRSILITGSTGFLAKMLVEKILRIQPDVRKLYLLVRAPDAAAAKERLLT 60
MEPGSIAERFRDRSILITGSTGFLAKMLVEKILRIQPDVRKLYLLVRAPDAAAAKERLLT
Sbjct: 1 MEPGSIAERFRDRSILITGSTGFLAKMLVEKILRIQPDVRKLYLLVRAPDAAAAKERLLT 60
Query: 61 EEKDYLMFCENNTVHLSTLSSRKKYALYLETSRIKTLGLETLRSYGYPRMSTSSLMVLQR 120
EEKDYLMFCENNTVHLSTLSSRKKYALYLETSRIKTLGLETLRSYGYPRMSTSSLMVLQR
Sbjct: 61 EEKDYLMFCENNTVHLSTLSSRKKYALYLETSRIKTLGLETLRSYGYPRMSTSSLMVLQR 120
Query: 121 PTLWRGT 127
PTLWRGT
Sbjct: 121 PTLWRGT 127
>Os04g0353600 Similar to Fatty acyl coA reductase
Length = 136
Score = 106 bits (264), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 58/104 (55%), Positives = 72/104 (69%), Gaps = 4/104 (3%)
Query: 1 MEPGSIAERFRDRSILITGSTGFLAKMLVEKILRIQPDVRKLYLLVRAPDAAAAKERLLT 60
ME G IAERFRD++ILITG+TGFL K+LVEKILR+QP+VRKLYLLVRAPDA AA+ER+LT
Sbjct: 1 METGGIAERFRDKTILITGATGFLGKLLVEKILRVQPEVRKLYLLVRAPDAIAAEERVLT 60
Query: 61 EEKDYLMFC---ENNTVHLSTLSSRKKYALYLETSRIKTLGLET 101
E +F E + K YAL + + + GLE+
Sbjct: 61 EVVGNGLFDVLREQYGAGFHSFIKEKIYALPGDVTH-ENFGLES 103
>Os04g0354600 Similar to Acyl CoA reductase-like protein
Length = 499
Score = 104 bits (260), Expect = 1e-23, Method: Composition-based stats.
Identities = 49/61 (80%), Positives = 57/61 (93%)
Query: 1 MEPGSIAERFRDRSILITGSTGFLAKMLVEKILRIQPDVRKLYLLVRAPDAAAAKERLLT 60
ME G IAERFRD++ILITG+TGFL K+LVEKILR+QP+VRKLYLLVRAPDA AA+ER+LT
Sbjct: 1 METGGIAERFRDKTILITGATGFLGKLLVEKILRVQPEVRKLYLLVRAPDAIAAEERVLT 60
Query: 61 E 61
E
Sbjct: 61 E 61
>Os09g0567500 Similar to Fatty acyl coA reductase
Length = 505
Score = 87.4 bits (215), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 42/61 (68%), Positives = 51/61 (83%)
Query: 1 MEPGSIAERFRDRSILITGSTGFLAKMLVEKILRIQPDVRKLYLLVRAPDAAAAKERLLT 60
M+ I E F+++SILITGSTGFL K+LVEKILR+QPDVRK+YL VRA DAA AK+R+ T
Sbjct: 5 MDEARIIEYFKNKSILITGSTGFLGKILVEKILRVQPDVRKIYLPVRAVDAATAKQRMQT 64
Query: 61 E 61
E
Sbjct: 65 E 65
>Os07g0489100
Length = 475
Score = 85.5 bits (210), Expect = 1e-17, Method: Composition-based stats.
Identities = 38/61 (62%), Positives = 52/61 (85%)
Query: 1 MEPGSIAERFRDRSILITGSTGFLAKMLVEKILRIQPDVRKLYLLVRAPDAAAAKERLLT 60
M+ ++A F+D+SILITGSTGFL K+ VEKILRIQPDV+K++LLVRA D ++A++R+L
Sbjct: 1 MDAATVAGYFKDKSILITGSTGFLGKIFVEKILRIQPDVKKIFLLVRAADTSSAEQRVLN 60
Query: 61 E 61
E
Sbjct: 61 E 61
>Os08g0557800 Similar to Fatty acyl coA reductase
Length = 509
Score = 80.1 bits (196), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 38/63 (60%), Positives = 51/63 (80%)
Query: 6 IAERFRDRSILITGSTGFLAKMLVEKILRIQPDVRKLYLLVRAPDAAAAKERLLTEEKDY 65
I E F+ +SILITG+TGFL K+LVEKILR+QPDV+K+YLLVRA D A+A +R+ +E +
Sbjct: 12 IIEYFKGKSILITGATGFLGKILVEKILRVQPDVKKIYLLVRAIDQASANQRVQSEVTET 71
Query: 66 LMF 68
+F
Sbjct: 72 ELF 74
>Os03g0167600 Similar to Male sterility protein 2
Length = 608
Score = 69.3 bits (168), Expect = 7e-13, Method: Composition-based stats.
Identities = 35/70 (50%), Positives = 46/70 (65%)
Query: 6 IAERFRDRSILITGSTGFLAKMLVEKILRIQPDVRKLYLLVRAPDAAAAKERLLTEEKDY 65
IAE ++ LITG TGFLAK+L+EKILR PDV K+Y+L++A D AA +RL E D
Sbjct: 85 IAEFLGGKNFLITGGTGFLAKVLIEKILRTNPDVGKIYVLIKAKDGDAALKRLHNEVVDT 144
Query: 66 LMFCENNTVH 75
+F +H
Sbjct: 145 ELFSRLQEIH 154
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.321 0.134 0.376
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 3,769,761
Number of extensions: 117317
Number of successful extensions: 299
Number of sequences better than 1.0e-10: 7
Number of HSP's gapped: 299
Number of HSP's successfully gapped: 7
Length of query: 127
Length of database: 17,035,801
Length adjustment: 89
Effective length of query: 38
Effective length of database: 12,388,755
Effective search space: 470772690
Effective search space used: 470772690
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 150 (62.4 bits)