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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os04g0354600

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Acyl CoA reductase-like protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.25 (0.0286) R2 : 0.249
β1 : -0.345 (0.104) R2dD : 0.0221 R2D : -0.0841
β2 : -- (--) R2dC : -- R2C : --
β3 : -16.2 (1.69) R2dE : 3.3 R2E : -4.16
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -73.6 (6.68) R2dD*E : 4.37 R2D*E : -3.01
γ1 : 0.00402 (0.0555) R2dN8 : 2.06e-05 R2N8 : -0.0547
σ : 0.484
deviance : 108.14
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_____
C
peak time of C : --
E
wheather : wind
threshold : 9
memory length : 86
response mode : > th
dose dependency : dose independent
G
type of G : sin
peak or start time of G : 6.65
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = wind, response mode = > th, dose dependency = dose independent, type of G = sin)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
104.1 0.479 3.24 -0.344 0.281 -16.2 -0.236 -74.8 0.00297 6.06 9.016 88 6.83 --
141.16 0.558 3.38 0.0188 0.181 -0.344 0.53 -- -0.0358 7.03 9.016 88 6.83 --
104.2 0.475 3.24 -0.348 0.278 -16.2 -- -74.8 0.00224 6.29 9.012 86 6.69 --
133.77 0.539 3.38 0.0589 0.229 1.64 -- -- -0.0146 6.4 9.077 44 6.21 --
108.14 0.484 3.25 -0.345 -- -16.2 -- -73.6 0.00402 -- 9 86 6.65 --
141.27 0.557 3.38 0.0224 0.184 -- 0.52 -- -0.0345 7.03 -- -- -- --
141.94 0.558 3.38 0.0313 0.189 -- -- -- -0.0363 6.48 -- -- -- --
136.16 0.543 3.38 0.131 -- 1.62 -- -- 0.0212 -- 9 44 7.98 --
133.23 0.538 3.38 -- 0.251 1.76 -- -- -0.0125 6.33 9.062 44 8.08 --
143.79 0.56 3.39 0.036 -- -- -- -- -0.0324 -- -- -- -- --
141.96 0.557 3.38 -- 0.189 -- -- -- -0.0398 6.47 -- -- -- --
136.54 0.544 3.38 -- -- 1.59 -- -- -0.00905 -- 9 44 8.05 --
143.82 0.56 3.39 -- -- -- -- -- -0.0364 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 101.45 wind 9 10 > th dose independent rect. 18 1
4 101.45 wind 9 10 > th dose dependent rect. 18 1
8 103.46 wind 9 90 > th dose dependent rect. 17 9
25 103.73 wind 9 90 > th dose independent rect. 17 9
75 106.45 wind 9 90 > th dose independent sin 13 NA
77 107.34 wind 9 90 > th dose dependent sin 13 NA
80 108.71 wind 9 90 < th dose independent sin 12 NA
82 108.74 wind 9 90 > th dose independent rect. 13 6
88 108.76 wind 9 90 > th dose independent rect. 13 13
153 110.67 wind 9 90 > th dose dependent rect. 13 6
159 110.68 wind 9 90 > th dose dependent rect. 13 13
303 121.69 humidity 70 90 < th dose independent rect. 16 1
341 123.06 wind 9 10 > th dose independent sin 12 NA
527 125.51 wind 9 10 < th dose independent sin 12 NA
558 126.30 wind 7 10 > th dose dependent rect. 17 12
573 126.40 atmosphere 1005 30 > th dose dependent rect. 17 1
608 126.93 wind 9 10 < th dose independent sin 14 NA
610 126.97 wind 9 270 > th dose independent rect. 13 1
614 126.97 wind 9 270 > th dose dependent rect. 13 1
796 129.34 atmosphere 1005 30 > th dose independent rect. 17 1
842 130.33 wind 9 10 < th dose independent rect. 5 23
907 131.27 temperature 25 90 < th dose independent rect. 16 1
908 131.28 temperature 25 90 > th dose dependent rect. 2 3
944 131.55 wind 7 10 > th dose dependent sin 11 NA
946 131.58 temperature 25 90 > th dose independent rect. 1 4
965 131.99 temperature 25 270 > th dose dependent rect. 2 1
966 131.99 radiation 1 90 < th dose dependent rect. 17 1
970 132.05 humidity 90 10 < th dose dependent rect. 4 1
983 132.17 temperature 25 90 < th dose independent rect. 16 3
990 132.26 atmosphere 1005 30 > th dose dependent rect. 2 3