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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os04g0353600

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Fatty acyl coA reductase.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.96 (0.0385) R2 : 0.00492
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.122 (0.0811) R2dN8 : 0.00636 R2N8 : 0.00492
σ : 0.725
deviance : 241.36
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
231.62 0.715 2.98 -0.174 0.138 -0.466 -0.333 -0.251 -0.208 20.5 26.1 3395 -- --
231.69 0.709 2.99 -0.227 0.135 -0.493 -0.304 -- -0.227 20.2 26.2 3416 -- --
231.97 0.709 2.98 -0.179 0.139 -0.468 -- -0.194 -0.213 20.4 26.13 3383 -- --
232 0.709 2.99 -0.237 0.137 -0.487 -- -- -0.229 20.4 26.16 3393 -- --
233.01 0.711 2.98 -0.224 -- -0.502 -- -0.0849 -0.224 -- 26.1 3432 -- --
239.09 0.725 2.97 -0.0646 0.178 -- -0.318 -- -0.127 21 -- -- -- --
239.44 0.725 2.97 -0.0537 0.179 -- -- -- -0.127 21.1 -- -- -- --
233.01 0.711 2.99 -0.247 -- -0.512 -- -- -0.235 -- 26.19 3432 -- --
233.32 0.711 2.98 -- 0.147 -0.419 -- -- -0.191 20.3 26.1 3383 -- --
241.29 0.726 2.96 -0.0533 -- -- -- -- -0.128 -- -- -- -- --
239.52 0.724 2.97 -- 0.179 -- -- -- -0.121 21.1 -- -- -- --
234.44 0.713 2.98 -- -- -0.443 -- -- -0.196 -- 26.14 3432 -- --
241.36 0.725 2.96 -- -- -- -- -- -0.122 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 223.37 wind 9.0 10 > th dose independent rect. 18 1
4 223.37 wind 9.0 10 > th dose dependent rect. 18 1
8 224.03 humidity 90.0 30 < th dose dependent rect. 20 1
9 224.17 humidity 90.0 10 < th dose independent rect. 20 1
11 224.38 atmosphere 1005.0 10 > th dose independent rect. 20 1
13 224.90 wind 9.0 90 > th dose independent rect. 17 17
14 224.91 wind 9.0 90 > th dose independent rect. 17 9
22 224.93 temperature 20.0 10 > th dose independent rect. 20 1
24 224.94 atmosphere 995.0 10 > th dose dependent rect. 20 1
26 224.95 wind 9.0 90 > th dose independent rect. 17 6
30 224.96 wind 9.0 90 > th dose dependent rect. 17 17
31 224.97 wind 9.0 90 > th dose dependent rect. 17 9
39 225.00 wind 9.0 90 > th dose dependent rect. 17 6
52 225.11 temperature 30.0 30 < th dose dependent rect. 20 1
54 225.22 wind 7.0 30 < th dose independent rect. 20 1
55 225.23 wind 1.0 30 > th dose independent rect. 20 1
57 225.23 temperature 10.0 30 > th dose independent rect. 20 1
59 225.23 temperature 30.0 30 < th dose independent rect. 20 1
60 225.23 humidity 50.0 30 > th dose independent rect. 20 1
64 225.23 atmosphere 1010.0 30 < th dose independent rect. 20 1
66 225.23 radiation 1.0 30 < th dose independent rect. 20 1
71 225.23 precipitation 0.1 30 < th dose independent rect. 20 1
72 225.23 temperature 10.0 30 > th dose independent rect. 21 23
73 225.23 radiation 1.0 30 < th dose dependent rect. 20 1
78 225.23 precipitation 0.1 30 < th dose dependent rect. 20 1
80 225.28 wind 9.0 30 < th dose dependent rect. 20 1
82 225.31 temperature 10.0 10 > th dose dependent rect. 20 1
84 225.39 wind 1.0 30 > th dose dependent rect. 20 1
86 225.39 atmosphere 1015.0 30 < th dose dependent rect. 20 1
88 225.42 atmosphere 1000.0 90 < th dose dependent rect. 16 3
116 225.61 humidity 50.0 30 > th dose dependent rect. 20 1
122 225.87 atmosphere 1000.0 90 < th dose dependent rect. 16 1
125 225.96 humidity 90.0 30 > th dose independent rect. 13 3
129 225.96 humidity 90.0 30 > th dose dependent rect. 13 3
134 225.99 humidity 90.0 30 > th dose independent rect. 13 1
140 225.99 humidity 90.0 30 > th dose dependent rect. 13 1
163 226.15 temperature 10.0 1440 > th dose independent rect. 21 1
166 226.15 temperature 30.0 1440 < th dose independent rect. 21 1
170 226.15 humidity 50.0 1440 > th dose independent rect. 21 1
176 226.15 atmosphere 995.0 1440 > th dose independent rect. 21 1
177 226.15 radiation 1.0 1440 < th dose independent rect. 21 1
197 226.15 temperature 10.0 1440 > th dose independent rect. 22 23
204 226.29 radiation 40.0 1440 < th dose dependent rect. 21 1
206 226.32 atmosphere 1000.0 90 < th dose independent rect. 16 3
215 226.51 wind 1.0 90 < th dose dependent rect. 12 1
223 226.81 humidity 70.0 270 < th dose independent rect. 16 1
229 227.02 humidity 80.0 30 < th dose dependent rect. 17 15
236 227.30 humidity 70.0 90 < th dose independent rect. 16 16
262 227.77 wind 9.0 10 < th dose independent rect. 21 23
270 228.18 wind 9.0 90 < th dose independent sin 12 NA
292 228.61 wind 9.0 90 > th dose independent sin 12 NA
298 228.69 wind 9.0 90 > th dose dependent sin 12 NA
300 228.71 wind 1.0 90 < th dose independent rect. 12 1
311 229.39 temperature 30.0 90 > th dose dependent rect. 16 20
312 229.42 atmosphere 1005.0 10 < th dose dependent rect. 17 1
342 229.81 humidity 70.0 720 < th dose independent rect. 7 1
358 229.87 temperature 30.0 720 > th dose dependent sin 11 NA
359 229.89 atmosphere 1000.0 10 > th dose independent rect. 21 23
364 229.99 temperature 30.0 720 > th dose dependent rect. 16 19
369 230.10 wind 1.0 1440 < th dose independent rect. 2 4
379 230.25 wind 9.0 90 > th dose independent rect. 14 20
380 230.25 wind 9.0 90 > th dose dependent rect. 14 4
398 230.26 temperature 30.0 720 > th dose independent rect. 16 18
415 230.28 temperature 30.0 720 > th dose dependent rect. 14 5
434 230.35 wind 9.0 90 > th dose independent rect. 12 22
435 230.35 wind 9.0 90 > th dose dependent rect. 14 20
453 230.36 wind 9.0 90 > th dose dependent rect. 12 6
454 230.36 wind 9.0 90 > th dose dependent rect. 14 12
484 230.37 wind 9.0 90 > th dose dependent rect. 14 9
516 230.40 humidity 70.0 720 < th dose dependent rect. 7 1
523 230.41 temperature 30.0 30 > th dose dependent rect. 17 1
559 230.45 wind 9.0 90 > th dose dependent rect. 12 22
560 230.46 wind 9.0 90 > th dose dependent rect. 12 14
570 230.47 wind 9.0 90 > th dose dependent rect. 12 10
585 230.48 humidity 60.0 270 > th dose independent rect. 3 18
597 230.52 temperature 30.0 270 < th dose independent rect. 3 18
612 230.53 humidity 50.0 720 < th dose independent rect. 17 19
618 230.60 temperature 30.0 10 > th dose independent rect. 17 1
627 230.72 atmosphere 995.0 720 < th dose independent rect. 14 1
668 230.72 atmosphere 995.0 720 < th dose dependent rect. 14 1
730 230.79 atmosphere 1000.0 270 < th dose independent rect. 23 1
739 230.81 wind 1.0 1440 > th dose independent rect. 23 7
740 230.81 temperature 10.0 1440 > th dose dependent rect. 14 1
745 230.82 atmosphere 1000.0 90 < th dose independent rect. 22 5
746 230.83 atmosphere 1000.0 270 > th dose independent rect. 13 10
760 230.90 atmosphere 1000.0 90 < th dose independent rect. 15 12
766 230.92 atmosphere 995.0 720 < th dose independent sin 6 NA
769 230.94 temperature 30.0 90 < th dose independent rect. 5 16
792 230.98 atmosphere 1000.0 10 < th dose dependent rect. 17 10
801 230.99 wind 1.0 1440 < th dose dependent rect. 1 5
803 230.99 humidity 60.0 720 < th dose dependent rect. 17 18
827 231.02 temperature 25.0 30 > th dose dependent rect. 20 3
841 231.06 wind 1.0 1440 < th dose dependent rect. 23 7
845 231.07 wind 1.0 270 < th dose dependent rect. 20 3
851 231.10 temperature 30.0 720 > th dose independent rect. 17 1
854 231.10 humidity 90.0 30 < th dose dependent rect. 17 4
855 231.10 atmosphere 1005.0 30 > th dose dependent rect. 17 4
861 231.11 humidity 70.0 1440 > th dose independent rect. 7 1
864 231.13 temperature 30.0 90 > th dose dependent sin 10 NA
867 231.15 humidity 70.0 1440 > th dose independent rect. 5 3
868 231.15 humidity 70.0 1440 > th dose independent rect. 22 10
873 231.18 humidity 70.0 1440 > th dose independent rect. 20 12
883 231.21 humidity 70.0 720 < th dose dependent rect. 19 14
920 231.24 atmosphere 995.0 720 < th dose dependent sin 6 NA
930 231.26 atmosphere 1000.0 10 < th dose independent rect. 23 3
946 231.27 atmosphere 1000.0 90 < th dose independent rect. 10 18
948 231.28 atmosphere 1000.0 10 < th dose independent rect. 23 5
958 231.30 wind 3.0 10 > th dose independent rect. 17 4
960 231.30 humidity 70.0 10 < th dose independent rect. 17 16
966 231.31 temperature 30.0 720 > th dose independent sin 11 NA
999 231.40 humidity 70.0 90 < th dose dependent rect. 16 20