BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os04g0353600 Os04g0353600|J013127I15
(136 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G22500.1 | chr5:7470541-7473916 FORWARD LENGTH=492 126 4e-30
AT3G44550.1 | chr3:16138060-16141409 FORWARD LENGTH=497 122 7e-29
AT3G44540.1 | chr3:16124079-16127769 FORWARD LENGTH=494 120 2e-28
AT3G44560.1 | chr3:16151177-16154397 FORWARD LENGTH=497 114 1e-26
AT3G11980.1 | chr3:3814484-3816927 FORWARD LENGTH=617 113 4e-26
AT4G33790.1 | chr4:16204325-16207891 REVERSE LENGTH=494 112 5e-26
AT3G56700.1 | chr3:20999731-21002058 REVERSE LENGTH=528 99 6e-22
AT5G22420.1 | chr5:7429903-7432586 FORWARD LENGTH=410 69 9e-13
>AT5G22500.1 | chr5:7470541-7473916 FORWARD LENGTH=492
Length = 491
Score = 126 bits (316), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 64/120 (53%), Positives = 90/120 (75%), Gaps = 2/120 (1%)
Query: 12 DKTILITGATGFLGKLLVEKILRVQPEVRKLYLLVRAPDAIAAEERVLTEVVGNGLFDVL 71
+KTILITGA GFL K+LVEKILR+QP V+K+YLL+RAPD +A +R+ +EV+ LF VL
Sbjct: 11 NKTILITGAPGFLAKVLVEKILRLQPNVKKIYLLLRAPDEKSAMQRLRSEVMEIDLFKVL 70
Query: 72 REQYGA-GFHSFIKEKIYALPGDVTHENFGLESYDILQ-LSQKVDIIVNGAATTNFMERY 129
R G ++ ++EKI +PGD++ +N GL+ D++Q + ++DII+N AATTNF ERY
Sbjct: 71 RNNLGEDNLNALMREKIVPVPGDISIDNLGLKDTDLIQRMWSEIDIIINIAATTNFDERY 130
>AT3G44550.1 | chr3:16138060-16141409 FORWARD LENGTH=497
Length = 496
Score = 122 bits (305), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 65/122 (53%), Positives = 85/122 (69%), Gaps = 2/122 (1%)
Query: 10 FRDKTILITGATGFLGKLLVEKILRVQPEVRKLYLLVRAPDAIAAEERVLTEVVGNGLFD 69
R+KTIL+TGATGFL K+ VEKILRVQP V+KLYLLVRA D AA +R+ TEV LF
Sbjct: 9 LRNKTILVTGATGFLAKVFVEKILRVQPNVKKLYLLVRASDNEAATKRLRTEVFEKELFK 68
Query: 70 VLREQYG-AGFHSFIKEKIYALPGDVTHENFGLESYDILQLSQK-VDIIVNGAATTNFME 127
VLR+ G ++ + EK+ ++PGD+ + G+ + + QK +DI+VN AATTNF E
Sbjct: 69 VLRQNLGDEKLNTLLYEKVVSVPGDIATDQLGINDSHLRERMQKEIDIVVNVAATTNFDE 128
Query: 128 RY 129
RY
Sbjct: 129 RY 130
>AT3G44540.1 | chr3:16124079-16127769 FORWARD LENGTH=494
Length = 493
Score = 120 bits (302), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 62/122 (50%), Positives = 86/122 (70%), Gaps = 2/122 (1%)
Query: 10 FRDKTILITGATGFLGKLLVEKILRVQPEVRKLYLLVRAPDAIAAEERVLTEVVGNGLFD 69
DKTIL+TG GFL K+ VEKILR+QP+V+KL+LL+RA D +A +R +EV+ LF
Sbjct: 9 LHDKTILVTGVPGFLAKVFVEKILRIQPKVKKLFLLLRAADNESAMQRFHSEVLEKDLFR 68
Query: 70 VLREQYG-AGFHSFIKEKIYALPGDVTHENFGLESYDILQ-LSQKVDIIVNGAATTNFME 127
VL+ G +FI EK+ +PGD++ +N G++ D+LQ + ++DIIVN AATTNF E
Sbjct: 69 VLKNALGDENLKAFITEKVVPIPGDISVDNLGVKGSDLLQHMWNEIDIIVNVAATTNFDE 128
Query: 128 RY 129
RY
Sbjct: 129 RY 130
>AT3G44560.1 | chr3:16151177-16154397 FORWARD LENGTH=497
Length = 496
Score = 114 bits (286), Expect = 1e-26, Method: Composition-based stats.
Identities = 61/122 (50%), Positives = 84/122 (68%), Gaps = 2/122 (1%)
Query: 10 FRDKTILITGATGFLGKLLVEKILRVQPEVRKLYLLVRAPDAIAAEERVLTEVVGNGLFD 69
++KTIL+TGATGFL K+ VEKILRVQP V KLYL+VRA D AA +R+ TE LF
Sbjct: 9 LQNKTILVTGATGFLAKVFVEKILRVQPNVNKLYLVVRASDNEAATKRLRTEAFEKDLFK 68
Query: 70 VLREQYG-AGFHSFIKEKIYALPGDVTHENFGLESYDILQLSQK-VDIIVNGAATTNFME 127
VLR+ G ++ + EK+ + GD+ ++ G++ ++ + QK +DI+VN AATTNF E
Sbjct: 69 VLRDNLGDEKLNTLLSEKVVPVAGDIAMDHLGMKDSNLRERMQKEIDIVVNVAATTNFDE 128
Query: 128 RY 129
RY
Sbjct: 129 RY 130
>AT3G11980.1 | chr3:3814484-3816927 FORWARD LENGTH=617
Length = 616
Score = 113 bits (282), Expect = 4e-26, Method: Composition-based stats.
Identities = 54/125 (43%), Positives = 84/125 (67%)
Query: 5 GIAERFRDKTILITGATGFLGKLLVEKILRVQPEVRKLYLLVRAPDAIAAEERVLTEVVG 64
GI + K LITG+TGFL K+L+EK+LR+ P+V K+YLL++A AA ER+ EV+
Sbjct: 123 GIISFLQGKKFLITGSTGFLAKVLIEKVLRMAPDVSKIYLLIKAKSKEAAIERLKNEVLD 182
Query: 65 NGLFDVLREQYGAGFHSFIKEKIYALPGDVTHENFGLESYDILQLSQKVDIIVNGAATTN 124
LF+ L+E +GA + SF+ K+ + G++ N GL++ +++++VD+I+N AA T
Sbjct: 183 AELFNTLKETHGASYMSFMLTKLIPVTGNICDSNIGLQADSAEEIAKEVDVIINSAANTT 242
Query: 125 FMERY 129
F ERY
Sbjct: 243 FNERY 247
>AT4G33790.1 | chr4:16204325-16207891 REVERSE LENGTH=494
Length = 493
Score = 112 bits (281), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 58/130 (44%), Positives = 82/130 (63%), Gaps = 1/130 (0%)
Query: 1 METGGIAERFRDKTILITGATGFLGKLLVEKILRVQPEVRKLYLLVRAPDAIAAEERVLT 60
ME + + +K+IL+ GA GFL + VEKILRV P V+KLYLL+RA +A +R
Sbjct: 5 MEVVSVLKYLDNKSILVVGAAGFLANIFVEKILRVAPNVKKLYLLLRASKGKSATQRFND 64
Query: 61 EVVGNGLFDVLREQYGAGFHSFIKEKIYALPGDVTHENFGLESYDIL-QLSQKVDIIVNG 119
E++ LF VL+E+YG + EKI + GD+ E+ GL+ +D+ ++ +VD IVN
Sbjct: 65 EILKKDLFKVLKEKYGPNLNQLTSEKITIVDGDICLEDLGLQDFDLAHEMIHQVDAIVNL 124
Query: 120 AATTNFMERY 129
AATT F ERY
Sbjct: 125 AATTKFDERY 134
>AT3G56700.1 | chr3:20999731-21002058 REVERSE LENGTH=528
Length = 527
Score = 99.0 bits (245), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 45/125 (36%), Positives = 83/125 (66%)
Query: 5 GIAERFRDKTILITGATGFLGKLLVEKILRVQPEVRKLYLLVRAPDAIAAEERVLTEVVG 64
GI K+ L+TGATGFL K+L+EK+LR E+ K++LL+R+ D +A +R+ E++
Sbjct: 76 GIVRFLEGKSYLVTGATGFLAKVLIEKLLRESLEIGKIFLLMRSKDQESANKRLYDEIIS 135
Query: 65 NGLFDVLREQYGAGFHSFIKEKIYALPGDVTHENFGLESYDILQLSQKVDIIVNGAATTN 124
+ LF +L++ +G+ + +F+K K+ + GD+ +N G++S +S+++D+I++ T
Sbjct: 136 SDLFKLLKQMHGSSYEAFMKRKLIPVIGDIEEDNLGIKSEIANMISEEIDVIISCGGRTT 195
Query: 125 FMERY 129
F +RY
Sbjct: 196 FDDRY 200
>AT5G22420.1 | chr5:7429903-7432586 FORWARD LENGTH=410
Length = 409
Score = 68.6 bits (166), Expect = 9e-13, Method: Composition-based stats.
Identities = 30/48 (62%), Positives = 41/48 (85%)
Query: 10 FRDKTILITGATGFLGKLLVEKILRVQPEVRKLYLLVRAPDAIAAEER 57
++TIL+TGA+GFL K+LVE+ILR+QP V++LYLLVRA D +AE+R
Sbjct: 9 LENRTILVTGASGFLAKVLVERILRLQPNVKRLYLLVRASDKKSAEQR 56
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.322 0.142 0.394
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 2,741,818
Number of extensions: 104289
Number of successful extensions: 309
Number of sequences better than 1.0e-05: 9
Number of HSP's gapped: 301
Number of HSP's successfully gapped: 9
Length of query: 136
Length of database: 11,106,569
Length adjustment: 88
Effective length of query: 48
Effective length of database: 8,693,961
Effective search space: 417310128
Effective search space used: 417310128
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 106 (45.4 bits)