Os03g0167600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Male sterility protein 2.
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Os03g0167600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Male sterility protein 2.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 189.78 | 0.647 | 4.48 | -0.499 | 0.637 | 2.78 | -0.304 | -3.26 | -0.0473 | 13 | 28.66 | 56 | -- | -- |
| 200.21 | 0.659 | 4.54 | -1.04 | 0.652 | 2.96 | 0.863 | -- | -0.134 | 13.7 | 28.21 | 65 | -- | -- |
| 190.03 | 0.642 | 4.48 | -0.552 | 0.643 | 2.8 | -- | -2.98 | -0.0554 | 13.1 | 28.61 | 58 | -- | -- |
| 202.48 | 0.663 | 4.54 | -1.05 | 0.654 | 2.86 | -- | -- | -0.171 | 13.1 | 28.08 | 56 | -- | -- |
| 203.75 | 0.665 | 4.5 | -0.546 | -- | 2.35 | -- | -3.3 | -0.112 | -- | 27.74 | 287 | -- | -- |
| 312.53 | 0.829 | 4.68 | -1.76 | 0.363 | -- | -1.21 | -- | -0.792 | 5.15 | -- | -- | -- | -- |
| 316.19 | 0.833 | 4.68 | -1.76 | 0.355 | -- | -- | -- | -0.786 | 5.26 | -- | -- | -- | -- |
| 215.66 | 0.684 | 4.57 | -1.12 | -- | 2.47 | -- | -- | -0.253 | -- | 26.3 | 239 | -- | -- |
| 228.34 | 0.704 | 4.5 | -- | 0.797 | 3.32 | -- | -- | 0.028 | 13.5 | 28.17 | 65 | -- | -- |
| 322.79 | 0.84 | 4.68 | -1.75 | -- | -- | -- | -- | -0.777 | -- | -- | -- | -- | -- |
| 397.98 | 0.933 | 4.64 | -- | 0.326 | -- | -- | -- | -0.59 | 5.46 | -- | -- | -- | -- |
| 245.62 | 0.73 | 4.52 | -- | -- | 2.91 | -- | -- | -0.0384 | -- | 26.29 | 269 | -- | -- |
| 403.5 | 0.938 | 4.64 | -- | -- | -- | -- | -- | -0.583 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 182.48 | temperature | 30 | 30 | < th | dose dependent | rect. | 5 | 23 |
| 3 | 184.18 | temperature | 30 | 90 | < th | dose dependent | rect. | 11 | 23 |
| 5 | 187.24 | temperature | 30 | 30 | < th | dose dependent | rect. | 1 | 23 |
| 6 | 187.78 | temperature | 15 | 10 | > th | dose dependent | rect. | 3 | 23 |
| 8 | 187.83 | temperature | 30 | 10 | < th | dose dependent | rect. | 13 | 23 |
| 10 | 187.88 | temperature | 20 | 720 | > th | dose dependent | rect. | 7 | 18 |
| 17 | 188.71 | temperature | 30 | 720 | < th | dose dependent | rect. | 5 | 19 |
| 22 | 189.00 | temperature | 20 | 720 | > th | dose dependent | rect. | 9 | 20 |
| 26 | 189.21 | temperature | 30 | 720 | < th | dose dependent | rect. | 7 | 16 |
| 31 | 189.27 | temperature | 20 | 720 | > th | dose dependent | rect. | 4 | 21 |
| 34 | 189.36 | temperature | 30 | 30 | < th | dose dependent | rect. | 17 | 23 |
| 65 | 190.80 | temperature | 30 | 30 | < th | dose dependent | no | NA | NA |
| 70 | 190.98 | temperature | 30 | 30 | < th | dose dependent | rect. | 15 | 23 |
| 78 | 191.15 | temperature | 30 | 30 | < th | dose dependent | rect. | 23 | 23 |
| 122 | 192.61 | temperature | 30 | 30 | < th | dose dependent | rect. | 19 | 23 |
| 125 | 192.68 | temperature | 10 | 30 | > th | dose dependent | no | NA | NA |
| 145 | 193.16 | temperature | 25 | 720 | < th | dose independent | rect. | 7 | 17 |
| 154 | 193.33 | temperature | 20 | 720 | > th | dose dependent | rect. | 16 | 23 |
| 167 | 193.59 | temperature | 20 | 1440 | > th | dose dependent | rect. | 11 | 1 |
| 168 | 193.60 | temperature | 20 | 720 | > th | dose dependent | no | NA | NA |
| 170 | 193.68 | temperature | 30 | 720 | < th | dose dependent | sin | 21 | NA |
| 183 | 194.31 | temperature | 30 | 30 | < th | dose dependent | rect. | 21 | 23 |
| 197 | 194.60 | temperature | 25 | 720 | > th | dose independent | rect. | 7 | 17 |
| 201 | 194.72 | temperature | 20 | 720 | > th | dose dependent | sin | 20 | NA |
| 203 | 194.74 | temperature | 20 | 720 | > th | dose dependent | rect. | 13 | 23 |
| 222 | 195.20 | temperature | 15 | 1440 | > th | dose dependent | rect. | 9 | 5 |
| 224 | 195.23 | temperature | 15 | 1440 | > th | dose dependent | rect. | 7 | 7 |
| 233 | 195.31 | temperature | 30 | 30 | < th | dose dependent | rect. | 9 | 23 |
| 247 | 195.56 | temperature | 15 | 1440 | > th | dose dependent | sin | 1 | NA |
| 269 | 195.76 | wind | 9 | 43200 | > th | dose dependent | rect. | 19 | 2 |
| 274 | 195.79 | temperature | 10 | 1440 | > th | dose dependent | rect. | 11 | 2 |
| 278 | 195.81 | temperature | 15 | 1440 | > th | dose dependent | rect. | 4 | 15 |
| 340 | 196.00 | wind | 5 | 43200 | > th | dose independent | rect. | 15 | 7 |
| 343 | 196.01 | temperature | 15 | 1440 | > th | dose dependent | rect. | 7 | 12 |
| 409 | 196.20 | wind | 5 | 43200 | > th | dose independent | rect. | 13 | 10 |
| 432 | 196.25 | temperature | 20 | 720 | > th | dose dependent | rect. | 20 | 23 |
| 433 | 196.26 | temperature | 15 | 1440 | > th | dose dependent | rect. | 4 | 11 |
| 538 | 196.55 | wind | 1 | 43200 | > th | dose dependent | rect. | 20 | 1 |
| 621 | 196.78 | wind | 5 | 43200 | < th | dose independent | rect. | 15 | 7 |
| 698 | 197.02 | wind | 9 | 43200 | < th | dose dependent | rect. | 20 | 1 |
| 726 | 197.10 | wind | 5 | 43200 | > th | dose independent | sin | 17 | NA |
| 734 | 197.12 | wind | 5 | 43200 | < th | dose independent | rect. | 13 | 10 |
| 849 | 197.44 | temperature | 10 | 1440 | > th | dose dependent | no | NA | NA |
| 874 | 197.51 | temperature | 10 | 1440 | > th | dose dependent | rect. | 15 | 23 |
| 901 | 197.58 | temperature | 10 | 1440 | > th | dose dependent | rect. | 17 | 23 |
| 913 | 197.62 | wind | 5 | 43200 | < th | dose independent | sin | 17 | NA |
| 920 | 197.63 | temperature | 10 | 1440 | > th | dose dependent | rect. | 13 | 23 |
| 949 | 197.72 | temperature | 30 | 1440 | < th | dose dependent | rect. | 7 | 7 |
| 957 | 197.76 | wind | 5 | 43200 | < th | dose independent | rect. | 11 | 13 |