BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os04g0337700 Os04g0337700|Os04g0337700
(178 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os04g0337700 Similar to IN2-2 protein 315 1e-86
Os04g0338000 Similar to IN2-2 protein 235 1e-62
Os04g0337500 Aldo/keto reductase family protein 230 5e-61
Os04g0339400 Aldo/keto reductase family protein 188 2e-48
Os10g0419100 Aldo/keto reductase family protein 150 5e-37
Os01g0618100 Similar to IN2-2 protein 140 7e-34
>Os04g0337700 Similar to IN2-2 protein
Length = 178
Score = 315 bits (807), Expect = 1e-86, Method: Compositional matrix adjust.
Identities = 156/168 (92%), Positives = 156/168 (92%)
Query: 11 VRRVKLGSQGLEVSAQGLGCMGMSAFHGPSKPEADMVALIHHAVAAGVTLLDTADIYGPH 70
VRRVKLGSQGLEVSAQGLGCMGMSAFHGPSKPEADMVALIHHAVAAGVTLLDTADIYGPH
Sbjct: 11 VRRVKLGSQGLEVSAQGLGCMGMSAFHGPSKPEADMVALIHHAVAAGVTLLDTADIYGPH 70
Query: 71 ANEALLGKALQVGSVRDNVALATKFGKFLADGKVGIRGDPAYVRAACEGSLQRLGVDCID 130
ANEALLGKALQVGSVRDNVALATKFGKFLADGKVGIRGDPAYVRAACEGSLQRLGVDCID
Sbjct: 71 ANEALLGKALQVGSVRDNVALATKFGKFLADGKVGIRGDPAYVRAACEGSLQRLGVDCID 130
Query: 131 LYYQHRVDKKVPIEVTKHKRVSDEKLIMXXXXXXXXXXXXANGWCQGS 178
LYYQHRVDKKVPIEVTKHKRVSDEKLIM ANGWCQGS
Sbjct: 131 LYYQHRVDKKVPIEVTKHKRVSDEKLIMKGKVGGGLVKGLANGWCQGS 178
>Os04g0338000 Similar to IN2-2 protein
Length = 351
Score = 235 bits (600), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 116/136 (85%), Positives = 121/136 (88%), Gaps = 1/136 (0%)
Query: 11 VRRVKLGSQGLEVSAQGLGCMGMSAFHGPSKPEADMVALIHHAVAAGVTLLDTADIYGPH 70
VRR+KLGSQGLEVSAQGLGCMGMSAF+GP KPE DMVALIHHAVAAGVTLLDT+DIYGPH
Sbjct: 11 VRRMKLGSQGLEVSAQGLGCMGMSAFYGPPKPEPDMVALIHHAVAAGVTLLDTSDIYGPH 70
Query: 71 ANEALLGKALQVGSVRDNVALATKFGKFLADGKVGIRGDPAYVRAACEGSLQRLGVDCID 130
NE LLGKALQ G VRD V LATKFG DGK +RGDPAYVRAACEGSL+RLGVD ID
Sbjct: 71 TNELLLGKALQ-GGVRDKVELATKFGIAFEDGKRDVRGDPAYVRAACEGSLRRLGVDSID 129
Query: 131 LYYQHRVDKKVPIEVT 146
LYYQHRVDKKVPIEVT
Sbjct: 130 LYYQHRVDKKVPIEVT 145
>Os04g0337500 Aldo/keto reductase family protein
Length = 350
Score = 230 bits (586), Expect = 5e-61, Method: Compositional matrix adjust.
Identities = 111/134 (82%), Positives = 116/134 (86%)
Query: 13 RVKLGSQGLEVSAQGLGCMGMSAFHGPSKPEADMVALIHHAVAAGVTLLDTADIYGPHAN 72
RVKLGSQG+EVSAQGLGCMGM P KPEADMVALI HA+AAGVT DT+D+YGPH N
Sbjct: 13 RVKLGSQGMEVSAQGLGCMGMCPAFEPPKPEADMVALIRHAIAAGVTFFDTSDLYGPHTN 72
Query: 73 EALLGKALQVGSVRDNVALATKFGKFLADGKVGIRGDPAYVRAACEGSLQRLGVDCIDLY 132
E LLGKALQ G VRD V LATKFGKF A GK GIRGDPAYVRAACEGSL+RLGVDCIDLY
Sbjct: 73 EVLLGKALQGGGVRDRVELATKFGKFFAGGKPGIRGDPAYVRAACEGSLRRLGVDCIDLY 132
Query: 133 YQHRVDKKVPIEVT 146
YQHRVDKKVPIEVT
Sbjct: 133 YQHRVDKKVPIEVT 146
>Os04g0339400 Aldo/keto reductase family protein
Length = 355
Score = 188 bits (478), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 95/139 (68%), Positives = 111/139 (79%), Gaps = 6/139 (4%)
Query: 11 VRRVKLGSQGLEVSAQGLGCMGMSAFHGPSKPEADMVALIHHAVAAGVTLLDTADIYGPH 70
VRR+KLGSQG+EVSAQGLGCMGMSA +G KPEADMVAL+ HAVAAGVT LDT+D+YGPH
Sbjct: 14 VRRMKLGSQGMEVSAQGLGCMGMSAVYGERKPEADMVALVRHAVAAGVTFLDTSDVYGPH 73
Query: 71 ANEALLGKALQVGSVRD---NVALATKFGKFLADGKVGIRGDPAYVRAACEGSLQRLGVD 127
NE L+GKA+ + + V +ATKFG A +RGDPAYVRAACEGSL+RLGV
Sbjct: 74 TNEVLVGKAVAAAAATEEEVQVQVATKFGITPA---WEVRGDPAYVRAACEGSLRRLGVG 130
Query: 128 CIDLYYQHRVDKKVPIEVT 146
CIDLYYQHR+D VP+E+T
Sbjct: 131 CIDLYYQHRIDSTVPVEIT 149
>Os10g0419100 Aldo/keto reductase family protein
Length = 373
Score = 150 bits (379), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 78/138 (56%), Positives = 96/138 (69%), Gaps = 4/138 (2%)
Query: 11 VRRVKLGSQGLEVSAQGLGCMGMSAFHGPSKPEADMVALIHHAVAAGVTLLDTADIYGPH 70
+ RVKLG+QGLEVS G GCMG++ + E D VA++ A AGVT DT+D YGPH
Sbjct: 36 IPRVKLGTQGLEVSKLGFGCMGLTGVYNAPVAEEDGVAVVRRAFEAGVTFFDTSDAYGPH 95
Query: 71 ANEALLGKALQVGSVRDNVALATKFG--KFLADGKVGIRGDPAYVRAACEGSLQRLGVDC 128
NE LLGKAL+ R+ V +ATKFG F A+G + ++G P YVRA CE SL+RL VD
Sbjct: 96 TNEVLLGKALK-QLPREKVQVATKFGIAGFDANGML-VKGTPDYVRACCEASLERLAVDY 153
Query: 129 IDLYYQHRVDKKVPIEVT 146
IDLYYQHR+D+ VPIE T
Sbjct: 154 IDLYYQHRIDQSVPIEET 171
>Os01g0618100 Similar to IN2-2 protein
Length = 344
Score = 140 bits (352), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 79/136 (58%), Positives = 95/136 (69%), Gaps = 4/136 (2%)
Query: 13 RVKLGSQGLEVSAQGLGCMGMS-AFHGPSKPEADMVALIHHAVAAGVTLLDTADIYGPHA 71
RVKLG++GLEVS G GCMG++ A++ P +A A+I HA GVT DT+D+YGP A
Sbjct: 12 RVKLGTRGLEVSKLGFGCMGLTGAYNSPLDDDAG-AAVIAHAFRRGVTFFDTSDVYGPLA 70
Query: 72 NEALLGKALQVGSVRDNVALATKFG-KFLADGKVGIRGDPAYVRAACEGSLQRLGVDCID 130
NE LLGKAL+ R+ V +ATKFG + ADG + G P YVRA CE SL RLGVD ID
Sbjct: 71 NEILLGKALK-QLPREQVQVATKFGIRRGADGVRAVCGRPEYVRACCEASLGRLGVDYID 129
Query: 131 LYYQHRVDKKVPIEVT 146
LYYQHRVD +PIE T
Sbjct: 130 LYYQHRVDTTIPIEDT 145
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.320 0.136 0.408
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 5,062,728
Number of extensions: 186851
Number of successful extensions: 387
Number of sequences better than 1.0e-10: 6
Number of HSP's gapped: 389
Number of HSP's successfully gapped: 6
Length of query: 178
Length of database: 17,035,801
Length adjustment: 94
Effective length of query: 84
Effective length of database: 12,127,685
Effective search space: 1018725540
Effective search space used: 1018725540
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 152 (63.2 bits)