Os04g0337700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to IN2-2 protein.
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Os04g0337700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to IN2-2 protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 110.29 | 0.493 | 7.51 | -0.277 | 1.48 | 1.14 | -0.371 | -4.6 | -0.687 | 19.4 | 25.24 | 683 | -- | -- |
| 114.8 | 0.499 | 7.43 | 0.423 | 1.51 | 0.791 | -1.11 | -- | -0.507 | 19.6 | 25.46 | 509 | -- | -- |
| 110.52 | 0.49 | 7.51 | -0.277 | 1.47 | 1.21 | -- | -5.26 | -0.662 | 19.5 | 25.7 | 648 | -- | -- |
| 117.45 | 0.505 | 7.43 | 0.433 | 1.77 | 0.554 | -- | -- | -0.486 | 19.2 | 26.29 | 1019 | -- | -- |
| 186.61 | 0.636 | 7.48 | -0.425 | -- | 2.15 | -- | -4.78 | -0.834 | -- | 24.69 | 573 | -- | -- |
| 124.89 | 0.524 | 7.42 | 0.577 | 1.85 | -- | -0.726 | -- | -0.459 | 19.4 | -- | -- | -- | -- |
| 126.33 | 0.526 | 7.43 | 0.593 | 1.84 | -- | -- | -- | -0.46 | 19.4 | -- | -- | -- | -- |
| 203.7 | 0.665 | 7.42 | 0.219 | -- | 1.9 | -- | -- | -0.64 | -- | 24.8 | 554 | -- | -- |
| 122.55 | 0.516 | 7.43 | -- | 1.76 | 0.617 | -- | -- | -0.529 | 19.2 | 26.3 | 1020 | -- | -- |
| 307.59 | 0.82 | 7.38 | 0.564 | -- | -- | -- | -- | -0.49 | -- | -- | -- | -- | -- |
| 135.62 | 0.545 | 7.44 | -- | 1.84 | -- | -- | -- | -0.526 | 19.4 | -- | -- | -- | -- |
| 204.92 | 0.667 | 7.42 | -- | -- | 1.94 | -- | -- | -0.666 | -- | 24.8 | 558 | -- | -- |
| 315.98 | 0.83 | 7.4 | -- | -- | -- | -- | -- | -0.553 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 100.54 | wind | 3.0 | 14400 | < th | dose independent | rect. | 3 | 1 |
| 2 | 101.22 | wind | 3.0 | 14400 | > th | dose independent | rect. | 3 | 1 |
| 13 | 103.50 | radiation | 1.0 | 270 | < th | dose independent | rect. | 5 | 20 |
| 14 | 103.53 | humidity | 80.0 | 1440 | < th | dose independent | rect. | 11 | 1 |
| 15 | 103.61 | humidity | 80.0 | 1440 | > th | dose independent | rect. | 11 | 1 |
| 18 | 103.92 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 17 | 1 |
| 21 | 104.02 | precipitation | 0.1 | 4320 | < th | dose independent | rect. | 16 | 1 |
| 22 | 104.02 | precipitation | 0.1 | 4320 | < th | dose dependent | rect. | 16 | 1 |
| 24 | 104.05 | precipitation | 0.1 | 4320 | > th | dose dependent | rect. | 16 | 1 |
| 28 | 104.20 | wind | 5.0 | 14400 | < th | dose dependent | rect. | 3 | 1 |
| 29 | 104.22 | radiation | 1.0 | 270 | < th | dose dependent | rect. | 11 | 13 |
| 43 | 104.52 | radiation | 1.0 | 270 | < th | dose independent | rect. | 11 | 13 |
| 44 | 104.55 | radiation | 1.0 | 270 | < th | dose dependent | rect. | 5 | 19 |
| 52 | 104.62 | humidity | 50.0 | 270 | > th | dose dependent | rect. | 5 | 19 |
| 63 | 104.79 | wind | 1.0 | 14400 | > th | dose dependent | rect. | 3 | 1 |
| 68 | 104.90 | humidity | 80.0 | 14400 | > th | dose independent | rect. | 4 | 1 |
| 69 | 104.90 | humidity | 90.0 | 14400 | < th | dose dependent | rect. | 3 | 1 |
| 72 | 104.93 | precipitation | 0.1 | 4320 | < th | dose independent | rect. | 5 | 2 |
| 73 | 104.93 | precipitation | 0.1 | 4320 | < th | dose dependent | rect. | 5 | 2 |
| 87 | 105.14 | humidity | 80.0 | 14400 | < th | dose independent | rect. | 4 | 1 |
| 113 | 105.40 | humidity | 50.0 | 30 | > th | dose dependent | rect. | 8 | 19 |
| 133 | 105.51 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 15 | 5 |
| 135 | 105.51 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 15 | 5 |
| 145 | 105.58 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 15 | 5 |
| 148 | 105.59 | humidity | 80.0 | 270 | > th | dose independent | rect. | 6 | 18 |
| 149 | 105.59 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 22 | 23 |
| 150 | 105.59 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 22 | 23 |
| 176 | 105.74 | precipitation | 0.1 | 4320 | < th | dose independent | rect. | 4 | 13 |
| 177 | 105.74 | precipitation | 0.1 | 4320 | < th | dose dependent | rect. | 4 | 13 |
| 185 | 105.78 | precipitation | 0.1 | 4320 | > th | dose dependent | rect. | 5 | 2 |
| 193 | 105.82 | wind | 9.0 | 14400 | < th | dose independent | rect. | 5 | 6 |
| 195 | 105.82 | wind | 1.0 | 14400 | > th | dose dependent | rect. | 3 | 3 |
| 205 | 105.85 | precipitation | 0.1 | 4320 | > th | dose independent | rect. | 4 | 13 |
| 219 | 105.90 | wind | 3.0 | 14400 | < th | dose independent | rect. | 21 | 9 |
| 225 | 105.93 | humidity | 50.0 | 30 | > th | dose dependent | rect. | 6 | 21 |
| 229 | 105.96 | precipitation | 0.1 | 4320 | > th | dose independent | rect. | 5 | 2 |
| 230 | 105.96 | humidity | 70.0 | 1440 | > th | dose dependent | rect. | 11 | 1 |
| 231 | 105.97 | humidity | 80.0 | 14400 | > th | dose dependent | rect. | 10 | 1 |
| 236 | 105.99 | wind | 9.0 | 14400 | < th | dose independent | rect. | 10 | 1 |
| 241 | 106.00 | humidity | 80.0 | 14400 | > th | dose independent | rect. | 10 | 4 |
| 246 | 106.01 | wind | 9.0 | 14400 | > th | dose independent | rect. | 6 | 5 |
| 249 | 106.04 | humidity | 80.0 | 14400 | > th | dose independent | rect. | 10 | 1 |
| 267 | 106.08 | temperature | 25.0 | 270 | > th | dose independent | rect. | 12 | 8 |
| 281 | 106.13 | humidity | 80.0 | 14400 | > th | dose independent | rect. | 13 | 1 |
| 310 | 106.26 | precipitation | 0.1 | 4320 | > th | dose dependent | rect. | 5 | 12 |
| 319 | 106.29 | humidity | 60.0 | 14400 | > th | dose independent | rect. | 15 | 1 |
| 324 | 106.29 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 5 | 15 |
| 326 | 106.29 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 5 | 15 |
| 344 | 106.33 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 5 | 15 |
| 356 | 106.36 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 19 | 2 |
| 373 | 106.44 | wind | 1.0 | 14400 | > th | dose dependent | rect. | 3 | 10 |
| 378 | 106.46 | wind | 5.0 | 14400 | < th | dose dependent | rect. | 3 | 8 |
| 383 | 106.47 | wind | 9.0 | 14400 | < th | dose dependent | rect. | 3 | 10 |
| 390 | 106.52 | wind | 9.0 | 14400 | > th | dose independent | rect. | 10 | 1 |
| 398 | 106.55 | humidity | 80.0 | 14400 | > th | dose dependent | rect. | 9 | 6 |
| 413 | 106.60 | precipitation | 0.1 | 30 | < th | dose independent | rect. | 3 | 18 |
| 416 | 106.60 | precipitation | 0.1 | 4320 | > th | dose dependent | rect. | 2 | 15 |
| 418 | 106.60 | precipitation | 0.1 | 30 | < th | dose dependent | rect. | 3 | 18 |
| 435 | 106.65 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 24 | 20 |
| 446 | 106.67 | wind | 7.0 | 270 | < th | dose independent | rect. | 14 | 15 |
| 447 | 106.67 | radiation | 1.0 | 270 | < th | dose dependent | sin | 18 | NA |
| 449 | 106.68 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 19 | 2 |
| 466 | 106.71 | humidity | 80.0 | 14400 | < th | dose independent | rect. | 10 | 4 |
| 474 | 106.72 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 3 | 17 |
| 477 | 106.73 | humidity | 80.0 | 14400 | < th | dose independent | rect. | 10 | 2 |
| 497 | 106.76 | wind | 3.0 | 14400 | > th | dose independent | rect. | 21 | 9 |
| 552 | 106.87 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 13 | 7 |
| 554 | 106.88 | humidity | 80.0 | 14400 | < th | dose independent | rect. | 13 | 1 |
| 567 | 106.90 | humidity | 80.0 | 1440 | < th | dose independent | rect. | 8 | 4 |
| 569 | 106.90 | humidity | 80.0 | 1440 | > th | dose dependent | rect. | 8 | 1 |
| 592 | 106.94 | temperature | 25.0 | 90 | > th | dose independent | rect. | 15 | 6 |
| 594 | 106.94 | humidity | 80.0 | 1440 | > th | dose dependent | rect. | 7 | 4 |
| 601 | 106.97 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 7 | 1 |
| 609 | 106.98 | precipitation | 0.1 | 4320 | > th | dose dependent | rect. | 5 | 4 |
| 614 | 106.99 | wind | 1.0 | 4320 | > th | dose independent | rect. | 17 | 3 |
| 627 | 107.00 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 15 | 5 |
| 643 | 107.03 | humidity | 50.0 | 270 | > th | dose independent | rect. | 5 | 19 |
| 644 | 107.03 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 16 | 5 |
| 677 | 107.08 | humidity | 80.0 | 14400 | > th | dose dependent | rect. | 9 | 9 |
| 696 | 107.11 | humidity | 80.0 | 1440 | > th | dose independent | rect. | 8 | 4 |
| 708 | 107.14 | humidity | 60.0 | 14400 | < th | dose independent | rect. | 15 | 1 |
| 727 | 107.17 | wind | 7.0 | 270 | < th | dose independent | rect. | 24 | 19 |
| 749 | 107.20 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 15 | 14 |
| 754 | 107.20 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 15 | 14 |
| 760 | 107.21 | humidity | 60.0 | 14400 | < th | dose independent | rect. | 14 | 20 |
| 775 | 107.23 | precipitation | 0.1 | 4320 | > th | dose dependent | rect. | 8 | 9 |
| 779 | 107.24 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 24 | 5 |
| 781 | 107.25 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 16 | 5 |
| 803 | 107.28 | humidity | 60.0 | 14400 | > th | dose independent | rect. | 15 | 19 |
| 806 | 107.29 | wind | 3.0 | 14400 | < th | dose independent | sin | 8 | NA |
| 815 | 107.30 | precipitation | 0.1 | 4320 | > th | dose independent | rect. | 5 | 4 |
| 844 | 107.35 | radiation | 30.0 | 43200 | > th | dose independent | rect. | 11 | 1 |
| 849 | 107.35 | humidity | 80.0 | 1440 | > th | dose dependent | rect. | 7 | 7 |
| 856 | 107.36 | humidity | 80.0 | 43200 | < th | dose dependent | rect. | 24 | 1 |
| 893 | 107.41 | precipitation | 0.1 | 4320 | > th | dose independent | sin | 2 | NA |
| 898 | 107.41 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 24 | 19 |
| 901 | 107.41 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 24 | 19 |
| 902 | 107.42 | precipitation | 0.1 | 4320 | < th | dose independent | sin | 2 | NA |
| 907 | 107.42 | precipitation | 0.1 | 4320 | < th | dose dependent | sin | 2 | NA |
| 914 | 107.43 | precipitation | 0.1 | 14400 | > th | dose dependent | sin | 1 | NA |
| 937 | 107.46 | temperature | 20.0 | 270 | > th | dose dependent | rect. | 13 | 7 |
| 942 | 107.47 | radiation | 1.0 | 270 | > th | dose independent | sin | 17 | NA |
| 963 | 107.50 | radiation | 1.0 | 270 | < th | dose independent | sin | 17 | NA |
| 976 | 107.51 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 7 | 15 |
| 990 | 107.53 | humidity | 80.0 | 43200 | < th | dose dependent | rect. | 23 | 7 |