BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os04g0244900 Os04g0244900|Os04g0244900
(243 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os04g0244900 Actin-binding FH2 domain containing protein 422 e-118
Os07g0596300 Actin-binding FH2 domain containing protein 135 3e-32
Os10g0119300 Actin-binding FH2 domain containing protein 115 2e-26
Os02g0794900 C2 calcium/lipid-binding region, CaLB domain c... 114 8e-26
Os03g0145400 97 1e-20
>Os04g0244900 Actin-binding FH2 domain containing protein
Length = 243
Score = 422 bits (1085), Expect = e-118, Method: Compositional matrix adjust.
Identities = 210/243 (86%), Positives = 210/243 (86%)
Query: 1 MFIWNNSLEKGARRSAAVVVSMLTEGKLNALCVTGTPGAIESVASLHYAYLDELNLLGLH 60
MFIWNNSLEKGARRSAAVVVSMLTEGKLNALCVTGTPGAIESVASLHYAYLDELNLLGLH
Sbjct: 1 MFIWNNSLEKGARRSAAVVVSMLTEGKLNALCVTGTPGAIESVASLHYAYLDELNLLGLH 60
Query: 61 AHPPLSATELAASKISRSTAGCFXXXXXXXXXXXXXXVVKGLQKVEQELAASESDGPVSE 120
AHPPLSATELAASKISRSTAGCF VVKGLQKVEQELAASESDGPVSE
Sbjct: 61 AHPPLSATELAASKISRSTAGCFEQLQLKALAEEQQAVVKGLQKVEQELAASESDGPVSE 120
Query: 121 VFRKTLKEFTDASGADVRSLSALYAEVGKSADALAYYFGEDPAKCPFEQGSWCSFVLEFS 180
VFRKTLKEFTDASGADVRSLSALYAEVGKSADALAYYFGEDPAKCPFEQGSWCSFVLEFS
Sbjct: 121 VFRKTLKEFTDASGADVRSLSALYAEVGKSADALAYYFGEDPAKCPFEQGSWCSFVLEFS 180
Query: 181 RPVTSTLLNFVGLFRKAHEENXXXXXXXXXXXXXXXXXXXNQDRTPVKSKDGLVDRSPRS 240
RPVTSTLLNFVGLFRKAHEEN NQDRTPVKSKDGLVDRSPRS
Sbjct: 181 RPVTSTLLNFVGLFRKAHEENIKQIEADKKKAQKEAEKEANQDRTPVKSKDGLVDRSPRS 240
Query: 241 PFK 243
PFK
Sbjct: 241 PFK 243
>Os07g0596300 Actin-binding FH2 domain containing protein
Length = 741
Score = 135 bits (339), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 67/104 (64%), Positives = 78/104 (75%), Gaps = 13/104 (12%)
Query: 98 VVKGLQKVEQELAASESDGPVSEVFRKTLKEFTDASGADVRSLSALYAEVGKSADALAYY 157
V KGL+KV+ E ASESDGPVSE+FR+ LKEFTD +GADV+SLS+L++EVGK ADAL Y
Sbjct: 593 VSKGLEKVQLEYNASESDGPVSEIFREKLKEFTDNAGADVQSLSSLFSEVGKKADALIKY 652
Query: 158 FGEDPAKCPFEQGSWCSFVLEFSRPVTSTLLNFVGLFRKAHEEN 201
FGEDP +CPFEQ V STLL FV +FRKAHEEN
Sbjct: 653 FGEDPVRCPFEQ-------------VISTLLTFVTMFRKAHEEN 683
>Os10g0119300 Actin-binding FH2 domain containing protein
Length = 417
Score = 115 bits (289), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 58/104 (55%), Positives = 76/104 (73%), Gaps = 13/104 (12%)
Query: 98 VVKGLQKVEQELAASESDGPVSEVFRKTLKEFTDASGADVRSLSALYAEVGKSADALAYY 157
+ KGL+KVEQELAAS +DG +S FR+ LK F DA+ A+VRSL +LY+EVG++AD+LA Y
Sbjct: 300 INKGLEKVEQELAASVNDGAISVGFREALKSFLDAAEAEVRSLISLYSEVGRNADSLAQY 359
Query: 158 FGEDPAKCPFEQGSWCSFVLEFSRPVTSTLLNFVGLFRKAHEEN 201
FGEDPA+CPFEQ VTS L+ FV +F+K+ +EN
Sbjct: 360 FGEDPARCPFEQ-------------VTSILVIFVNMFKKSRDEN 390
>Os02g0794900 C2 calcium/lipid-binding region, CaLB domain containing protein
Length = 1505
Score = 114 bits (284), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 58/104 (55%), Positives = 70/104 (67%), Gaps = 13/104 (12%)
Query: 98 VVKGLQKVEQELAASESDGPVSEVFRKTLKEFTDASGADVRSLSALYAEVGKSADALAYY 157
+ KGL+KVEQEL SE DGP SE+F K LKEF + A+ RSL+ LY+ GKSAD+LA+Y
Sbjct: 1297 ITKGLEKVEQELTTSEKDGPGSEIFYKKLKEFLADAQAEGRSLAFLYSTAGKSADSLAHY 1356
Query: 158 FGEDPAKCPFEQGSWCSFVLEFSRPVTSTLLNFVGLFRKAHEEN 201
FGEDP +CPFEQ V STLL+FV F +AH EN
Sbjct: 1357 FGEDPVRCPFEQ-------------VVSTLLSFVKTFERAHAEN 1387
>Os03g0145400
Length = 723
Score = 96.7 bits (239), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 53/78 (67%), Positives = 56/78 (71%)
Query: 1 MFIWNNSLEKGARRSAAVVVSMLTEGKLNALCVTGTPGAIESVASLHYAYLDELNLLGLH 60
M W NS EKG RRSAAVVVSMLTEGKLNAL VTG PGAIESVASL YA LDELNLLGL
Sbjct: 301 MLSWKNSSEKGVRRSAAVVVSMLTEGKLNALRVTGIPGAIESVASLLYADLDELNLLGLS 360
Query: 61 AHPPLSATELAASKISRS 78
L+ KI ++
Sbjct: 361 ILNKLAHDHDICDKIGKT 378
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.315 0.130 0.376
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 6,619,723
Number of extensions: 208524
Number of successful extensions: 576
Number of sequences better than 1.0e-10: 5
Number of HSP's gapped: 572
Number of HSP's successfully gapped: 5
Length of query: 243
Length of database: 17,035,801
Length adjustment: 98
Effective length of query: 145
Effective length of database: 11,918,829
Effective search space: 1728230205
Effective search space used: 1728230205
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 154 (63.9 bits)