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Os07g0596300

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Actin-binding FH2 domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 9.88 (0.0178) R2 : 0.766
β1 : -- (--) R2dD : -- R2D : --
β2 : 1.12 (0.0469) R2dC : 0.294 R2C : 0.372
β3 : 1.55 (0.0577) R2dE : 0.387 R2E : 0.472
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0457 (0.0381) R2dN8 : 0.000968 R2N8 : 0.005
σ : 0.334
deviance : 51.39
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_____
C
peak time of C : 17.4
E
wheather : temperature
threshold : 6.849
memory length : 237
response mode : > th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 12
open length of G : 19.4

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
45.73 0.318 9.89 -0.532 1.08 1.62 -0.198 -0.713 -0.0257 17.4 8.378 237 12.1 19.4
46.52 0.318 9.88 -0.461 1.08 1.61 -0.257 -- -0.0214 17.5 8.426 240 12 19.4
45.76 0.315 9.89 -0.531 1.07 1.63 -- -0.741 -0.0227 17.4 8.188 239 12 19.3
46.61 0.318 9.89 -0.448 1.06 1.62 -- -- -0.00518 17.4 7.964 241 12 19.4
72.14 0.396 9.79 -0.658 -- 1.96 -- 0.443 0.101 -- 11.34 295 11.1 15.4
90.21 0.445 9.85 -0.243 1.52 -- -0.0458 -- 0.217 19.5 -- -- -- --
90.22 0.445 9.85 -0.242 1.52 -- -- -- 0.217 19.5 -- -- -- --
64.31 0.374 9.85 -0.372 -- 1.85 -- -- 0.0982 -- 13.91 227 12.2 12.4
51.39 0.334 9.88 -- 1.12 1.55 -- -- 0.0457 17.4 6.849 237 12 19.4
213.62 0.683 9.82 -0.264 -- -- -- -- 0.193 -- -- -- -- --
91.76 0.448 9.85 -- 1.52 -- -- -- 0.244 19.5 -- -- -- --
66.78 0.381 9.84 -- -- 1.82 -- -- 0.131 -- 10.28 233 12.1 11.1
215.46 0.685 9.81 -- -- -- -- -- 0.223 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 46.77 temperature 10.0 270 > th dose dependent rect. 12 19
4 48.73 temperature 20.0 270 > th dose independent rect. 12 19
6 49.07 temperature 20.0 270 > th dose independent rect. 12 5
14 50.53 atmosphere 995.0 270 > th dose independent rect. 17 19
16 50.66 humidity 90.0 270 < th dose independent rect. 12 5
17 50.69 humidity 50.0 270 > th dose independent rect. 17 19
19 50.83 precipitation 0.1 270 < th dose independent rect. 17 19
20 50.83 precipitation 0.1 270 < th dose dependent rect. 17 19
21 50.88 temperature 10.0 270 > th dose independent rect. 12 5
23 50.88 atmosphere 1015.0 270 < th dose independent rect. 12 5
24 50.88 temperature 10.0 270 > th dose independent rect. 17 19
27 50.94 wind 9.0 270 < th dose independent rect. 17 19
28 50.96 wind 1.0 270 > th dose independent rect. 12 5
29 50.97 precipitation 0.1 270 < th dose independent rect. 12 5
30 50.97 precipitation 0.1 270 < th dose dependent rect. 12 5
33 51.13 wind 9.0 270 < th dose independent rect. 12 5
35 51.35 temperature 10.0 10 > th dose dependent rect. 14 19
36 51.40 temperature 10.0 270 > th dose dependent rect. 12 5
43 51.88 temperature 20.0 270 > th dose independent rect. 13 3
54 52.38 wind 1.0 270 > th dose independent rect. 17 19
81 53.29 temperature 10.0 270 > th dose independent rect. 13 3
83 53.29 atmosphere 1010.0 270 < th dose independent rect. 13 3
85 53.29 temperature 10.0 270 > th dose independent rect. 16 21
86 53.30 atmosphere 995.0 270 > th dose independent rect. 12 5
89 53.41 atmosphere 995.0 270 > th dose independent rect. 16 21
90 53.44 precipitation 0.1 270 < th dose independent rect. 13 3
91 53.44 precipitation 0.1 270 < th dose dependent rect. 13 3
92 53.45 wind 9.0 270 < th dose independent rect. 13 3
93 53.46 wind 9.0 270 < th dose independent rect. 16 21
96 53.50 wind 1.0 270 > th dose independent rect. 13 3
98 53.52 temperature 10.0 270 > th dose independent rect. 6 6
99 53.52 atmosphere 995.0 270 > th dose independent rect. 6 6
100 53.52 atmosphere 1015.0 270 < th dose independent rect. 6 6
101 53.52 temperature 10.0 270 > th dose independent rect. 12 18
103 53.54 precipitation 0.1 270 < th dose independent rect. 6 6
104 53.54 precipitation 0.1 270 < th dose dependent rect. 6 6
105 53.56 precipitation 0.1 270 < th dose independent rect. 16 21
106 53.56 precipitation 0.1 270 < th dose dependent rect. 16 21
108 53.63 temperature 10.0 270 > th dose dependent rect. 13 3
110 53.74 wind 9.0 270 < th dose independent rect. 6 6
115 53.79 temperature 30.0 270 < th dose independent rect. 17 19
117 53.83 temperature 10.0 270 > th dose dependent rect. 22 9
120 54.03 wind 1.0 270 > th dose independent rect. 6 6
121 54.03 wind 9.0 270 < th dose independent rect. 12 18
122 54.04 humidity 50.0 270 > th dose independent rect. 6 6
123 54.05 atmosphere 1015.0 270 < th dose independent rect. 12 18
130 54.24 radiation 1.0 270 > th dose independent rect. 12 5
154 54.44 precipitation 0.1 270 < th dose independent rect. 12 18
157 54.44 precipitation 0.1 270 < th dose dependent rect. 12 18
162 54.53 humidity 50.0 270 > th dose dependent rect. 22 9
176 54.71 wind 1.0 270 > th dose dependent rect. 12 5
178 54.73 radiation 30.0 270 < th dose dependent rect. 16 9
179 54.81 radiation 20.0 270 < th dose independent rect. 16 9
192 54.96 radiation 1.0 270 > th dose independent rect. 12 17
196 54.98 radiation 1.0 270 > th dose independent rect. 12 7
220 55.07 atmosphere 995.0 270 > th dose independent rect. 13 3
235 55.19 radiation 1.0 270 > th dose independent rect. 6 6
268 55.79 humidity 50.0 270 > th dose independent rect. 16 9
280 55.94 wind 1.0 270 > th dose dependent rect. 13 3
292 56.08 atmosphere 1015.0 270 < th dose independent rect. 22 9
298 56.13 radiation 40.0 90 < th dose independent rect. 13 6
336 56.41 radiation 1.0 270 > th dose independent rect. 13 3
357 56.75 temperature 30.0 270 < th dose independent rect. 16 9
361 56.80 temperature 10.0 270 > th dose independent rect. 22 9
362 56.80 temperature 30.0 270 < th dose independent rect. 22 9
363 56.80 humidity 50.0 270 > th dose independent rect. 22 9
365 56.80 atmosphere 995.0 270 > th dose independent rect. 22 9
366 56.80 radiation 40.0 270 < th dose independent rect. 22 9
367 56.80 temperature 10.0 270 > th dose independent rect. 7 15
369 56.84 wind 9.0 270 < th dose independent rect. 22 9
372 56.85 wind 9.0 270 < th dose independent rect. 17 8
380 56.91 atmosphere 995.0 270 > th dose independent rect. 17 8
383 56.94 temperature 10.0 270 > th dose independent rect. 17 8
387 56.94 temperature 10.0 270 > th dose independent rect. 1 16
388 56.94 atmosphere 1015.0 270 < th dose independent rect. 1 16
389 56.95 humidity 50.0 270 > th dose independent rect. 13 3
402 57.07 atmosphere 1015.0 270 < th dose dependent rect. 12 5
425 57.17 wind 9.0 270 < th dose independent rect. 1 16
465 57.36 radiation 1.0 270 > th dose independent rect. 8 3
467 57.36 atmosphere 995.0 270 > th dose independent rect. 12 18
470 57.40 wind 9.0 270 < th dose independent rect. 7 15
493 57.53 wind 1.0 270 > th dose independent rect. 17 9
499 57.57 precipitation 0.1 270 < th dose independent rect. 7 15
500 57.57 precipitation 0.1 270 < th dose dependent rect. 7 15
508 57.66 precipitation 0.1 270 < th dose independent rect. 17 8
509 57.66 precipitation 0.1 270 < th dose dependent rect. 17 8
511 57.67 precipitation 0.1 270 < th dose independent rect. 22 9
512 57.67 precipitation 0.1 270 < th dose dependent rect. 22 9
529 57.79 precipitation 0.1 270 < th dose independent rect. 1 16
531 57.79 precipitation 0.1 270 < th dose dependent rect. 1 16
597 58.16 radiation 1.0 10 > th dose independent rect. 9 5
654 58.44 temperature 10.0 10 > th dose dependent rect. 14 6
659 58.46 atmosphere 1015.0 10 < th dose independent rect. 14 19
688 58.62 temperature 10.0 270 > th dose independent rect. 9 1
689 58.62 atmosphere 995.0 270 > th dose independent rect. 9 1
690 58.62 atmosphere 1015.0 270 < th dose independent rect. 9 1
692 58.62 temperature 10.0 270 > th dose independent rect. 10 23
702 58.67 humidity 50.0 270 > th dose independent rect. 9 1
708 58.68 temperature 30.0 270 < th dose independent rect. 7 5
709 58.69 temperature 20.0 10 > th dose independent rect. 14 6
711 58.70 precipitation 0.1 270 < th dose independent rect. 9 1
712 58.70 precipitation 0.1 270 < th dose dependent rect. 9 1
713 58.71 wind 9.0 270 < th dose independent rect. 9 1
737 58.82 radiation 40.0 270 < th dose dependent rect. 22 9
746 58.89 atmosphere 995.0 270 > th dose independent rect. 7 15
789 59.13 wind 1.0 270 > th dose independent rect. 9 1
803 59.18 temperature 10.0 270 > th dose dependent rect. 1 16
849 59.32 temperature 10.0 10 > th dose independent rect. 9 5
851 59.32 atmosphere 995.0 10 > th dose independent rect. 9 5
852 59.32 atmosphere 1015.0 10 < th dose independent rect. 9 5
853 59.32 precipitation 0.1 10 < th dose independent rect. 9 5
859 59.32 temperature 10.0 10 > th dose independent rect. 14 19
860 59.32 precipitation 0.1 10 < th dose dependent rect. 9 5
868 59.36 radiation 40.0 90 < th dose independent rect. 13 20
874 59.39 atmosphere 995.0 270 > th dose independent rect. 1 15
913 59.57 radiation 40.0 10 < th dose independent rect. 14 19
929 59.64 atmosphere 1015.0 10 < th dose dependent rect. 14 19
962 59.78 wind 1.0 10 > th dose independent rect. 9 5
980 59.81 wind 9.0 10 < th dose independent rect. 9 5