BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os04g0205100 Os04g0205100|Os04g0205100
         (184 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os04g0205100                                                      262   1e-70
Os01g0289900  Transferase family protein                          144   5e-35
Os01g0738900  Transferase family protein                          142   1e-34
Os06g0145300  Transferase family protein                           65   4e-11

>Os04g0205100 
          Length = 184

 Score =  262 bits (669), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 137/184 (74%), Positives = 137/184 (74%)

Query: 1   MSRRSCGSCPAWRAPELPTPMLAVQVTRFVXXXXXXXVAVQHAVPDGQSFWRFMDEWSGP 60
           MSRRSCGSCPAWRAPELPTPMLAVQVTRFV       VAVQHAVPDGQSFWRFMDEWSGP
Sbjct: 1   MSRRSCGSCPAWRAPELPTPMLAVQVTRFVGGGDGGGVAVQHAVPDGQSFWRFMDEWSGP 60

Query: 61  ALGQPSAPAPVFDRSAIVHPMAAVMAQRILRKVTPEXXXXXXXXXXRRTWQHHDTTTLEL 120
           ALGQPSAPAPVFDRSAIVHPMAAVMAQRILRKVTPE          RRTWQHHDTTTLEL
Sbjct: 61  ALGQPSAPAPVFDRSAIVHPMAAVMAQRILRKVTPELPLLLTANLLRRTWQHHDTTTLEL 120

Query: 121 ERHRIADIKNLIVELDEATTSPGQVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKPCPQ 180
           ERHRIADIKNLIVELDEATTSPGQV                              KPCPQ
Sbjct: 121 ERHRIADIKNLIVELDEATTSPGQVRRAAAAAAATDRRRPPDSPSHPRPSSARATKPCPQ 180

Query: 181 LLAQ 184
           LLAQ
Sbjct: 181 LLAQ 184



>Os01g0289900 Transferase family protein
          Length = 622

 Score =  144 bits (362), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 86/140 (61%), Positives = 92/140 (65%), Gaps = 5/140 (3%)

Query: 9   CPAWRAPELPTPMLAVQVTRFVXXXXXXXVAVQHAVP----DGQSFWRFMDEWSGPALGQ 64
            P+   PELP P+LAVQ TRFV       VAV  AV     DGQSFWRFMD WS  A G+
Sbjct: 294 VPSLEVPELPAPVLAVQATRFVGGGGGGGVAVGVAVHHAVADGQSFWRFMDAWSAAARGR 353

Query: 65  PSAPAPVFDRSAIVHPMAAVMAQRILRKVTPEXXXXXXXXXXRRTWQHHDTTTLELERHR 124
           PS PAP FDRSAIVHPMAA MA+RILRK  PE          RRTW+ H  TTLEL+ HR
Sbjct: 354 PSPPAPAFDRSAIVHPMAADMARRILRKKAPELPLIPTANLLRRTWERHVVTTLELDSHR 413

Query: 125 IADIKNLIVELDEATT-SPG 143
           I  IKN I ELDEATT SPG
Sbjct: 414 IGHIKNRIAELDEATTASPG 433




 Score =  116 bits (291), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 63/92 (68%), Positives = 68/92 (73%), Gaps = 4/92 (4%)

Query: 9   CPAWRAPELPTPMLAVQVTRFVXXX----XXXXVAVQHAVPDGQSFWRFMDEWSGPALGQ 64
            P+  APELP P+LAVQVTRFV           VAV HAV DG SFWRFMD WS  A G+
Sbjct: 138 VPSLEAPELPAPVLAVQVTRFVGGGDRGGVAVGVAVHHAVADGLSFWRFMDVWSAAARGR 197

Query: 65  PSAPAPVFDRSAIVHPMAAVMAQRILRKVTPE 96
           PS PAPVFDRSAIVHPMAA +A+RILRKVTPE
Sbjct: 198 PSPPAPVFDRSAIVHPMAADVARRILRKVTPE 229



>Os01g0738900 Transferase family protein
          Length = 135

 Score =  142 bits (358), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 71/87 (81%), Positives = 74/87 (85%)

Query: 10  PAWRAPELPTPMLAVQVTRFVXXXXXXXVAVQHAVPDGQSFWRFMDEWSGPALGQPSAPA 69
           P+  APELP P+LAVQVTRFV       VAVQHAVPDGQSFWRFMD WS PALG+PSAPA
Sbjct: 33  PSLEAPELPAPLLAVQVTRFVGGGDGGGVAVQHAVPDGQSFWRFMDAWSAPALGRPSAPA 92

Query: 70  PVFDRSAIVHPMAAVMAQRILRKVTPE 96
           PVFDRSAIVHPMAA MAQRILRKVTPE
Sbjct: 93  PVFDRSAIVHPMAAAMAQRILRKVTPE 119



>Os06g0145300 Transferase family protein
          Length = 489

 Score = 64.7 bits (156), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 46/137 (33%), Positives = 61/137 (44%), Gaps = 13/137 (9%)

Query: 9   CPAWRAPELPTPMLAVQVTR---------FVXXXXXXXVAVQHAVPDGQSFWRFMDEWSG 59
            P     +LP P+LAVQVTR                  V+V HAV DGQS W+FM  WS 
Sbjct: 148 VPELEVEQLPAPVLAVQVTRPAFRNDDGDDAVGVVAVGVSVHHAVADGQSLWQFMKAWSA 207

Query: 60  PAL-GQPSAPA---PVFDRSAIVHPMAAVMAQRILRKVTPEXXXXXXXXXXRRTWQHHDT 115
            A+ G P+AP    P FDR+ I HP +  +A + L+  +P               +   T
Sbjct: 208 AAMVGSPAAPGLLPPTFDRALIRHPRSEELASKFLQLSSPTLPEVKLSRVAADVIKGQRT 267

Query: 116 TTLELERHRIADIKNLI 132
            T  L   +I  +K  I
Sbjct: 268 RTFLLRADQIRSLKRRI 284



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.321    0.132    0.424 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 5,223,085
Number of extensions: 171802
Number of successful extensions: 476
Number of sequences better than 1.0e-10: 4
Number of HSP's gapped: 478
Number of HSP's successfully gapped: 5
Length of query: 184
Length of database: 17,035,801
Length adjustment: 95
Effective length of query: 89
Effective length of database: 12,075,471
Effective search space: 1074716919
Effective search space used: 1074716919
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 153 (63.5 bits)