Os04g0205100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description :
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Os04g0205100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description :
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = atmosphere,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 134.24 | 0.54 | -1170 | 7160 | 0.5 | -343000 | -0.0202 | 2100000 | 0.227 | 1.53 | 995 | 10 | -- | -- |
| 126.28 | 0.527 | 3.38 | -0.229 | 0.5 | 5.69 | -0.0207 | -- | 0.225 | 1.43 | 994.8 | 10 | -- | -- |
| 134.24 | 0.54 | -1170 | 7160 | 0.497 | -343000 | -- | 2100000 | 0.224 | 1.53 | 995 | 10 | -- | -- |
| 126.29 | 0.523 | 3.38 | -0.228 | 0.5 | 5.69 | -- | -- | 0.225 | 1.43 | 994.8 | 10 | -- | -- |
| 149.46 | 0.569 | -1170 | 7160 | -- | -343000 | -- | 2100000 | 0.237 | -- | 995 | 10 | -- | -- |
| 158.38 | 0.59 | 3.39 | -0.2 | 0.464 | -- | -0.113 | -- | 0.213 | 1.1 | -- | -- | -- | -- |
| 158.43 | 0.589 | 3.39 | -0.196 | 0.464 | -- | -- | -- | 0.214 | 1.11 | -- | -- | -- | -- |
| 141.62 | 0.557 | 3.38 | -0.208 | -- | 5.5 | -- | -- | 0.235 | -- | 994.8 | 10 | -- | -- |
| 127.66 | 0.529 | 3.38 | -- | 0.496 | 5.66 | -- | -- | 0.25 | 1.41 | 994.8 | 10 | -- | -- |
| 171.77 | 0.612 | 3.38 | -0.179 | -- | -- | -- | -- | 0.223 | -- | -- | -- | -- | -- |
| 159.44 | 0.591 | 3.38 | -- | 0.461 | -- | -- | -- | 0.236 | 1.09 | -- | -- | -- | -- |
| 142.75 | 0.558 | 3.37 | -- | -- | 5.47 | -- | -- | 0.258 | -- | 994.8 | 10 | -- | -- |
| 172.62 | 0.613 | 3.37 | -- | -- | -- | -- | -- | 0.243 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 125.99 | atmosphere | 995 | 10 | > th | dose independent | sin | 6 | NA |
| 7 | 127.63 | atmosphere | 1000 | 90 | < th | dose dependent | rect. | 14 | 1 |
| 9 | 127.97 | atmosphere | 1000 | 10 | < th | dose dependent | rect. | 16 | 1 |
| 24 | 129.94 | temperature | 30 | 10 | > th | dose dependent | rect. | 16 | 1 |
| 47 | 131.37 | atmosphere | 995 | 30 | < th | dose independent | rect. | 18 | 22 |
| 48 | 131.42 | atmosphere | 995 | 10 | < th | dose dependent | rect. | 18 | 22 |
| 51 | 131.48 | atmosphere | 995 | 90 | < th | dose dependent | rect. | 18 | 21 |
| 55 | 131.74 | atmosphere | 995 | 10 | < th | dose dependent | sin | 6 | NA |
| 57 | 131.78 | atmosphere | 995 | 90 | < th | dose independent | rect. | 14 | 1 |
| 58 | 131.78 | atmosphere | 995 | 10 | < th | dose independent | rect. | 15 | 1 |
| 313 | 131.80 | atmosphere | 995 | 10 | < th | dose independent | sin | 6 | NA |
| 316 | 131.83 | atmosphere | 995 | 90 | < th | dose independent | sin | 7 | NA |
| 427 | 135.60 | temperature | 30 | 10 | > th | dose dependent | sin | 12 | NA |
| 509 | 139.25 | atmosphere | 995 | 10 | < th | dose dependent | no | NA | NA |
| 746 | 140.25 | atmosphere | 995 | 10 | < th | dose dependent | sin | 18 | NA |
| 753 | 140.57 | atmosphere | 995 | 10 | > th | dose independent | rect. | 11 | 23 |
| 763 | 141.32 | temperature | 30 | 10 | > th | dose independent | rect. | 15 | 1 |
| 789 | 141.67 | atmosphere | 995 | 10 | > th | dose independent | rect. | 1 | 23 |
| 830 | 142.98 | humidity | 50 | 270 | < th | dose independent | rect. | 13 | 2 |
| 831 | 142.98 | humidity | 50 | 270 | < th | dose dependent | rect. | 13 | 2 |
| 879 | 144.31 | atmosphere | 995 | 30 | > th | dose independent | rect. | 21 | 23 |
| 880 | 144.37 | atmosphere | 995 | 30 | > th | dose independent | rect. | 9 | 23 |
| 902 | 145.17 | atmosphere | 995 | 30 | > th | dose independent | rect. | 23 | 23 |