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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os06g0145300

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Transferase family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.19 (0.022) R2 : 0.000509
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0223 (0.0463) R2dN8 : 0.000657 R2N8 : 0.000509
σ : 0.414
deviance : 78.6
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = atmosphere, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
72.67 0.401 3.17 0.259 0.193 -0.221 0.409 4.66 0.0556 10.3 996.5 1116 -- --
72.72 0.397 3.18 0.187 0.19 0.542 0.49 -- 0.0486 10.4 996.6 1099 -- --
73.34 0.399 3.17 0.276 0.191 -0.235 -- 4.73 0.0563 10.1 996.6 1106 -- --
73.35 0.399 3.18 0.199 0.192 0.567 -- -- 0.0563 10.1 996.6 1115 -- --
75.55 0.405 3.17 0.278 -- -0.32 -- 5.18 0.0558 -- 997 1115 -- --
74.55 0.405 3.18 0.206 0.191 -- 0.4 -- 0.046 10.1 -- -- -- --
75.17 0.406 3.18 0.221 0.19 -- -- -- 0.0466 9.91 -- -- -- --
75.56 0.405 3.18 0.196 -- 0.563 -- -- 0.0557 -- 997.2 1119 -- --
74.38 0.402 3.18 -- 0.193 0.601 -- -- 0.0354 10 996.6 1115 -- --
77.33 0.411 3.19 0.219 -- -- -- -- 0.0466 -- -- -- -- --
76.46 0.409 3.19 -- 0.189 -- -- -- 0.022 9.82 -- -- -- --
76.57 0.408 3.19 -- -- 0.6 -- -- 0.0349 -- 997.2 1120 -- --
78.6 0.414 3.19 -- -- -- -- -- 0.0223 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 70.39 radiation 1.0 10 < th dose dependent rect. 5 3
5 70.45 radiation 1.0 10 < th dose dependent rect. 5 1
11 71.23 wind 1.0 14400 > th dose independent rect. 24 5
12 71.26 wind 1.0 43200 < th dose independent rect. 6 1
13 71.32 wind 1.0 14400 < th dose independent rect. 24 5
14 71.32 wind 1.0 14400 < th dose independent rect. 2 6
15 71.34 wind 1.0 43200 > th dose independent rect. 6 1
16 71.35 wind 7.0 14400 < th dose independent rect. 19 1
18 71.37 wind 1.0 14400 > th dose independent rect. 2 6
19 71.37 wind 1.0 14400 < th dose dependent rect. 2 6
20 71.39 wind 1.0 14400 > th dose independent rect. 24 8
21 71.39 wind 1.0 14400 < th dose independent rect. 24 8
22 71.39 wind 5.0 14400 > th dose dependent rect. 19 1
23 71.40 wind 1.0 43200 > th dose independent rect. 6 4
25 71.43 wind 1.0 43200 < th dose independent rect. 6 4
29 71.45 wind 1.0 43200 < th dose dependent rect. 6 4
36 71.52 wind 7.0 14400 > th dose independent rect. 19 1
38 71.52 wind 1.0 43200 < th dose dependent rect. 3 10
42 71.55 wind 1.0 4320 < th dose dependent rect. 3 2
57 71.62 wind 1.0 43200 > th dose independent rect. 8 1
61 71.62 wind 3.0 43200 < th dose dependent rect. 7 1
79 71.66 wind 1.0 43200 < th dose dependent rect. 1 16
85 71.67 wind 1.0 43200 < th dose dependent rect. 3 14
96 71.70 wind 1.0 14400 < th dose dependent rect. 24 5
107 71.72 wind 1.0 43200 > th dose independent rect. 1 13
108 71.72 wind 1.0 43200 < th dose independent rect. 1 13
114 71.73 wind 1.0 43200 < th dose independent rect. 3 11
125 71.74 wind 1.0 43200 < th dose dependent sin 3 NA
128 71.74 wind 1.0 43200 < th dose dependent rect. 5 8
140 71.77 wind 1.0 43200 > th dose independent rect. 3 10
154 71.78 wind 1.0 43200 < th dose independent sin 4 NA
166 71.79 wind 1.0 43200 > th dose independent sin 4 NA
199 71.81 wind 5.0 14400 > th dose dependent rect. 19 4
205 71.82 wind 1.0 4320 < th dose independent rect. 3 2
206 71.82 radiation 1.0 10 < th dose independent rect. 5 2
207 71.82 wind 7.0 14400 < th dose independent rect. 19 4
232 71.84 atmosphere 1000.0 90 < th dose independent rect. 5 3
241 71.84 atmosphere 1000.0 90 < th dose dependent rect. 5 3
247 71.85 atmosphere 1005.0 90 > th dose independent rect. 3 6
257 71.86 wind 1.0 14400 > th dose independent rect. 3 2
263 71.86 precipitation 0.1 43200 > th dose dependent rect. 13 1
283 71.88 wind 1.0 14400 > th dose independent rect. 20 12
310 71.90 wind 1.0 14400 < th dose independent rect. 20 12
315 71.90 wind 1.0 14400 < th dose independent rect. 16 16
316 71.90 wind 1.0 14400 < th dose dependent rect. 13 2
321 71.91 humidity 80.0 43200 > th dose independent rect. 6 1
349 71.92 wind 1.0 14400 > th dose independent rect. 16 16
351 71.92 wind 1.0 43200 < th dose dependent rect. 5 12
355 71.93 wind 1.0 14400 > th dose independent sin 8 NA
372 71.94 atmosphere 1000.0 270 < th dose independent rect. 4 1
374 71.94 atmosphere 1000.0 10 < th dose independent rect. 5 4
387 71.94 temperature 25.0 270 > th dose dependent rect. 4 1
388 71.94 temperature 20.0 270 < th dose dependent rect. 2 1
389 71.94 atmosphere 1000.0 270 < th dose dependent rect. 4 1
397 71.95 wind 5.0 14400 < th dose independent rect. 21 2
406 71.95 atmosphere 1000.0 10 < th dose dependent rect. 5 4
444 71.97 wind 5.0 14400 > th dose independent rect. 21 2
524 72.01 wind 1.0 43200 > th dose independent rect. 5 12
642 72.06 radiation 20.0 10 > th dose independent rect. 16 20
647 72.06 wind 1.0 14400 < th dose dependent rect. 14 18
652 72.07 atmosphere 995.0 43200 > th dose independent rect. 11 2
690 72.08 radiation 20.0 10 > th dose independent rect. 7 5
733 72.09 wind 9.0 4320 < th dose independent rect. 3 1
799 72.11 humidity 80.0 43200 > th dose independent rect. 2 7
818 72.11 wind 9.0 43200 > th dose dependent rect. 18 9
820 72.11 temperature 25.0 30 > th dose dependent rect. 21 12
827 72.11 wind 1.0 43200 < th dose dependent rect. 19 18
830 72.12 radiation 20.0 10 > th dose independent sin 7 NA
882 72.13 radiation 20.0 10 > th dose independent rect. 14 22
904 72.14 humidity 80.0 43200 < th dose independent rect. 6 1
925 72.14 wind 1.0 43200 < th dose dependent rect. 19 14
932 72.15 wind 1.0 1440 < th dose independent rect. 6 1
941 72.15 wind 1.0 43200 < th dose independent rect. 19 18
965 72.15 wind 1.0 43200 < th dose dependent rect. 16 21
995 72.16 wind 9.0 30 < th dose independent rect. 11 23
996 72.16 wind 3.0 14400 < th dose dependent rect. 24 1
997 72.16 atmosphere 1000.0 1440 < th dose dependent rect. 21 1
998 72.16 humidity 90.0 43200 < th dose dependent rect. 5 2