BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os04g0190000 Os04g0190000|AK064761
(117 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os04g0190000 Conserved hypothetical protein 201 1e-52
Os04g0361500 Plant-specific FAD-dependent oxidoreductase fa... 113 2e-26
Os08g0114300 Plant-specific FAD-dependent oxidoreductase fa... 100 2e-22
Os08g0519100 Plant-specific FAD-dependent oxidoreductase fa... 80 4e-16
Os03g0563100 Plant-specific FAD-dependent oxidoreductase fa... 77 3e-15
Os02g0124600 Plant-specific FAD-dependent oxidoreductase fa... 75 1e-14
>Os04g0190000 Conserved hypothetical protein
Length = 117
Score = 201 bits (510), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 101/117 (86%), Positives = 101/117 (86%)
Query: 1 PPPLSHPHXXXXXXXXXXXXXXXXGDPDLDAAKVSLGAISQVTLALQPLFKLSVAFVNRN 60
PPPLSHPH GDPDLDAAKVSLGAISQVTLALQPLFKLSVAFVNRN
Sbjct: 1 PPPLSHPHAATSARPRALPSPRRTGDPDLDAAKVSLGAISQVTLALQPLFKLSVAFVNRN 60
Query: 61 DSDIAEMVAMWGGLHEFGDVASLPRRRMVVYREHGRAADHAGFLDAVDPFLNLFFFY 117
DSDIAEMVAMWGGLHEFGDVASLPRRRMVVYREHGRAADHAGFLDAVDPFLNLFFFY
Sbjct: 61 DSDIAEMVAMWGGLHEFGDVASLPRRRMVVYREHGRAADHAGFLDAVDPFLNLFFFY 117
>Os04g0361500 Plant-specific FAD-dependent oxidoreductase family protein
Length = 590
Score = 113 bits (283), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 59/75 (78%), Positives = 62/75 (82%), Gaps = 3/75 (4%)
Query: 25 GDPDLDAAKVSLG---AISQVTLALQPLFKLSVAFVNRNDSDIAEMVAMWGGLHEFGDVA 81
GDPDLDAAKVSLG AISQVTL LQPLFK SVAFV RNDSD+A+ VA WG LHEFGDVA
Sbjct: 214 GDPDLDAAKVSLGVLGAISQVTLELQPLFKRSVAFVTRNDSDVADTVAAWGRLHEFGDVA 273
Query: 82 SLPRRRMVVYREHGR 96
LPRRR+ VYRE R
Sbjct: 274 WLPRRRVAVYREDDR 288
>Os08g0114300 Plant-specific FAD-dependent oxidoreductase family protein
Length = 589
Score = 100 bits (250), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 52/75 (69%), Positives = 57/75 (76%), Gaps = 3/75 (4%)
Query: 25 GDPDLDAAKVSLGA---ISQVTLALQPLFKLSVAFVNRNDSDIAEMVAMWGGLHEFGDVA 81
GDPDLDAAKVSLG ISQVT LQP FK SV FV R+DSD AE VA+WGG HEFGD+A
Sbjct: 202 GDPDLDAAKVSLGVLGVISQVTFELQPQFKRSVRFVTRDDSDFAEKVAVWGGAHEFGDMA 261
Query: 82 SLPRRRMVVYREHGR 96
LPR+ V+YRE R
Sbjct: 262 WLPRQGKVIYREDDR 276
>Os08g0519100 Plant-specific FAD-dependent oxidoreductase family protein
Length = 450
Score = 79.7 bits (195), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 45/77 (58%), Positives = 49/77 (63%), Gaps = 3/77 (3%)
Query: 25 GDPDLDAAKVSLGA---ISQVTLALQPLFKLSVAFVNRNDSDIAEMVAMWGGLHEFGDVA 81
GDPDLDA KVSLG ISQVTLALQPLF SV+F R D D+AE + G HEFGDV
Sbjct: 207 GDPDLDAVKVSLGVLGVISQVTLALQPLFNRSVSFRRRGDGDLAERAVAFAGEHEFGDVV 266
Query: 82 SLPRRRMVVYREHGRAA 98
P R V+R R A
Sbjct: 267 WYPARGEAVFRIDDRVA 283
>Os03g0563100 Plant-specific FAD-dependent oxidoreductase family protein
Length = 604
Score = 77.0 bits (188), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 42/70 (60%), Positives = 49/70 (70%), Gaps = 3/70 (4%)
Query: 26 DPDLDAAKVSLGA---ISQVTLALQPLFKLSVAFVNRNDSDIAEMVAMWGGLHEFGDVAS 82
DP+LDAAKVSLG ISQVTLALQPLFK SV F+ R+D D+A+ V +G HEF D+A
Sbjct: 222 DPELDAAKVSLGVLGVISQVTLALQPLFKRSVTFMERDDDDLADQVTKFGYQHEFADIAW 281
Query: 83 LPRRRMVVYR 92
P VYR
Sbjct: 282 YPGIGRAVYR 291
>Os02g0124600 Plant-specific FAD-dependent oxidoreductase family protein
Length = 599
Score = 74.7 bits (182), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 41/71 (57%), Positives = 47/71 (66%), Gaps = 3/71 (4%)
Query: 25 GDPDLDAAKVSLGA---ISQVTLALQPLFKLSVAFVNRNDSDIAEMVAMWGGLHEFGDVA 81
GDP+LDAAKVSLG ISQVTL LQP+FK SVAF + D D+AE V + G HEF D+
Sbjct: 214 GDPELDAAKVSLGVLGVISQVTLKLQPMFKRSVAFQHCGDGDLAERVVAFAGEHEFADIL 273
Query: 82 SLPRRRMVVYR 92
P VYR
Sbjct: 274 WYPGHGKAVYR 284
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.325 0.141 0.440
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 3,452,788
Number of extensions: 107105
Number of successful extensions: 363
Number of sequences better than 1.0e-10: 6
Number of HSP's gapped: 357
Number of HSP's successfully gapped: 6
Length of query: 117
Length of database: 17,035,801
Length adjustment: 84
Effective length of query: 33
Effective length of database: 12,649,825
Effective search space: 417444225
Effective search space used: 417444225
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 149 (62.0 bits)