BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os04g0127800 Os04g0127800|AK105313
(988 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os04g0127800 Conserved hypothetical protein 1961 0.0
Os12g0245100 Hypothetical protein 148 2e-35
Os08g0564800 Conserved hypothetical protein 122 1e-27
Os12g0245000 Hypothetical protein 103 6e-22
>Os04g0127800 Conserved hypothetical protein
Length = 988
Score = 1961 bits (5081), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 947/988 (95%), Positives = 947/988 (95%)
Query: 1 MERXXXXXXXXXXXXXXHWMATEDLGLRRNIINNMVKKFMTITNSQQDHHYREIQNYAIR 60
MER HWMATEDLGLRRNIINNMVKKFMTITNSQQDHHYREIQNYAIR
Sbjct: 1 MERATAAHPASSSVSAAHWMATEDLGLRRNIINNMVKKFMTITNSQQDHHYREIQNYAIR 60
Query: 61 CEQDALNKTTNKEDYLRCIAQRIMNMEMKVRRSQSLQAGXXXXXXXXXXXXXNVCTTPQN 120
CEQDALNKTTNKEDYLRCIAQRIMNMEMKVRRSQSLQAG NVCTTPQN
Sbjct: 61 CEQDALNKTTNKEDYLRCIAQRIMNMEMKVRRSQSLQAGTTPSTQRPSSQQQNVCTTPQN 120
Query: 121 PGQVPDQHRASAPNSQIEASQEQTVMVAAPDCYLNFNTTAISPVAMCVXXXXXXXXXXXX 180
PGQVPDQHRASAPNSQIEASQEQTVMVAAPDCYLNFNTTAISPVAMCV
Sbjct: 121 PGQVPDQHRASAPNSQIEASQEQTVMVAAPDCYLNFNTTAISPVAMCVHPSQQPQSQQHQ 180
Query: 181 XXAKQLHPTNVVGYNPTSLNQIQGQSVSGQNFQQNHVLGQNASGSGTQQRQLVETPEQHQ 240
AKQLHPTNVVGYNPTSLNQIQGQSVSGQNFQQNHVLGQNASGSGTQQRQLVETPEQHQ
Sbjct: 181 QQAKQLHPTNVVGYNPTSLNQIQGQSVSGQNFQQNHVLGQNASGSGTQQRQLVETPEQHQ 240
Query: 241 LLRMKQQHMRGNQQQNFTQRNQILPAQQAHLGKMQIGHPAVQNNQQNVGMSCQHMTPPQC 300
LLRMKQQHMRGNQQQNFTQRNQILPAQQAHLGKMQIGHPAVQNNQQNVGMSCQHMTPPQC
Sbjct: 241 LLRMKQQHMRGNQQQNFTQRNQILPAQQAHLGKMQIGHPAVQNNQQNVGMSCQHMTPPQC 300
Query: 301 QVATAQQSSLGCDSPQTLEPIVIAGEVDWREEIFQKIKSFKDAYLSEVLEYDQIVHVPKL 360
QVATAQQSSLGCDSPQTLEPIVIAGEVDWREEIFQKIKSFKDAYLSEVLEYDQIVHVPKL
Sbjct: 301 QVATAQQSSLGCDSPQTLEPIVIAGEVDWREEIFQKIKSFKDAYLSEVLEYDQIVHVPKL 360
Query: 361 TEEQLRSLPVENAEKLRRIRHVKKIIAIMLDLLNTQKSNVRKGMQNIFPIFQQYLGQLRL 420
TEEQLRSLPVENAEKLRRIRHVKKIIAIMLDLLNTQKSNVRKGMQNIFPIFQQYLGQLRL
Sbjct: 361 TEEQLRSLPVENAEKLRRIRHVKKIIAIMLDLLNTQKSNVRKGMQNIFPIFQQYLGQLRL 420
Query: 421 SISKSKARKTVAKIGCQSQNCSENSHIVNLGSNTAPFTCDARQQKQQEQVISAKTSRMEQ 480
SISKSKARKTVAKIGCQSQNCSENSHIVNLGSNTAPFTCDARQQKQQEQVISAKTSRMEQ
Sbjct: 421 SISKSKARKTVAKIGCQSQNCSENSHIVNLGSNTAPFTCDARQQKQQEQVISAKTSRMEQ 480
Query: 481 AIMTRTPTPQQESHGCHLLGVPSSCFSPKALQPSSTNTIEECFTPSPVTQTVQPIQVASP 540
AIMTRTPTPQQESHGCHLLGVPSSCFSPKALQPSSTNTIEECFTPSPVTQTVQPIQVASP
Sbjct: 481 AIMTRTPTPQQESHGCHLLGVPSSCFSPKALQPSSTNTIEECFTPSPVTQTVQPIQVASP 540
Query: 541 HVTSPSAYGKSSVPKPSVARVVSHSASIKSRLASSPSRPEGAHAASPNITSVESTLPTPI 600
HVTSPSAYGKSSVPKPSVARVVSHSASIKSRLASSPSRPEGAHAASPNITSVESTLPTPI
Sbjct: 541 HVTSPSAYGKSSVPKPSVARVVSHSASIKSRLASSPSRPEGAHAASPNITSVESTLPTPI 600
Query: 601 AKPGTVRAASPCTPVKSTSQSQLSKPAVTEVDSCRACVTSKLKSPVGKPETAGAASPCAS 660
AKPGTVRAASPCTPVKSTSQSQLSKPAVTEVDSCRACVTSKLKSPVGKPETAGAASPCAS
Sbjct: 601 AKPGTVRAASPCTPVKSTSQSQLSKPAVTEVDSCRACVTSKLKSPVGKPETAGAASPCAS 660
Query: 661 VKSTVSLDVDSVTEFLQHRVVAPTVANGGSSNQAIHTLVSAAPPKAAHQADDQVQNGAEE 720
VKSTVSLDVDSVTEFLQHRVVAPTVANGGSSNQAIHTLVSAAPPKAAHQADDQVQNGAEE
Sbjct: 661 VKSTVSLDVDSVTEFLQHRVVAPTVANGGSSNQAIHTLVSAAPPKAAHQADDQVQNGAEE 720
Query: 721 MEAKKPFSRLIETLLSSSPEALLHSSNSMRLAIWEADRIPAPSPLPYRPRNGKMKRDFDH 780
MEAKKPFSRLIETLLSSSPEALLHSSNSMRLAIWEADRIPAPSPLPYRPRNGKMKRDFDH
Sbjct: 721 MEAKKPFSRLIETLLSSSPEALLHSSNSMRLAIWEADRIPAPSPLPYRPRNGKMKRDFDH 780
Query: 781 VTSRPISSPLRSMDESCMTYECVAFEDESSGEYNAKRQKTQVNANDALVDEIKTINNKLV 840
VTSRPISSPLRSMDESCMTYECVAFEDESSGEYNAKRQKTQVNANDALVDEIKTINNKLV
Sbjct: 781 VTSRPISSPLRSMDESCMTYECVAFEDESSGEYNAKRQKTQVNANDALVDEIKTINNKLV 840
Query: 841 DTVMNFADENGTDEIIYQNGGGMLIKLSYISMSLSPSLKSLFAASEMTIVMPVKLLVPAD 900
DTVMNFADENGTDEIIYQNGGGMLIKLSYISMSLSPSLKSLFAASEMTIVMPVKLLVPAD
Sbjct: 841 DTVMNFADENGTDEIIYQNGGGMLIKLSYISMSLSPSLKSLFAASEMTIVMPVKLLVPAD 900
Query: 901 YPKSSPILVDNDDEQRRLSDISYAVAVAFGCAVDELPEPRSIEAMAMAWDGCVRRAVTEV 960
YPKSSPILVDNDDEQRRLSDISYAVAVAFGCAVDELPEPRSIEAMAMAWDGCVRRAVTEV
Sbjct: 901 YPKSSPILVDNDDEQRRLSDISYAVAVAFGCAVDELPEPRSIEAMAMAWDGCVRRAVTEV 960
Query: 961 AHRHGGGTFSSRHNQWRAGYLHGPMMSL 988
AHRHGGGTFSSRHNQWRAGYLHGPMMSL
Sbjct: 961 AHRHGGGTFSSRHNQWRAGYLHGPMMSL 988
>Os12g0245100 Hypothetical protein
Length = 477
Score = 148 bits (374), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 80/168 (47%), Positives = 107/168 (63%), Gaps = 15/168 (8%)
Query: 814 NAKRQKTQVNANDALVDEIKTINNKLVDTVMNFADENGTDEIIYQNGGGMLIKLSYISMS 873
+ KRQKT+ + N AL +EI +N KL+DTV+ A E GG I+ SY ++S
Sbjct: 314 DVKRQKTR-HVNSALANEIDAMNAKLIDTVVRIAGEKD---------GGTEIEFSYTAVS 363
Query: 874 LSPSLKSLFAASEMTIVMPVKLLVPADYPKSSPILVDNDD---EQRR--LSDISYAVAVA 928
L+ +K LFAA + V PVKL VPADYP+SSP++ +N+D EQRR +IS V+ A
Sbjct: 364 LALDMKQLFAAYGTSPVKPVKLFVPADYPRSSPVVSNNNDDGDEQRRGMFGEISGMVSAA 423
Query: 929 FGCAVDELPEPRSIEAMAMAWDGCVRRAVTEVAHRHGGGTFSSRHNQW 976
F CA+ ELP S++ MA W+ CV+ + + A RHGGGTFSSRH QW
Sbjct: 424 FHCALRELPPSMSVKQMASEWNSCVQMIMKKFAIRHGGGTFSSRHGQW 471
Score = 87.4 bits (215), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 42/111 (37%), Positives = 73/111 (65%)
Query: 318 LEPIVIAGEVDWREEIFQKIKSFKDAYLSEVLEYDQIVHVPKLTEEQLRSLPVENAEKLR 377
++ I GEV+WREE+FQKI K+++ SE+ ++D+++H + TEEQL+SLP + A++ +
Sbjct: 124 VQMITGVGEVNWREEMFQKISVLKNSFFSELTDFDRLLHNCQKTEEQLQSLPKKQADQYK 183
Query: 378 RIRHVKKIIAIMLDLLNTQKSNVRKGMQNIFPIFQQYLGQLRLSISKSKAR 428
RI +K + LDLL QKS++ +GM+ F ++ + L ++KA+
Sbjct: 184 RITKLKDAVRSALDLLQLQKSSIDEGMKVKFCKYESSIHSLLRFYRETKAK 234
>Os08g0564800 Conserved hypothetical protein
Length = 1320
Score = 122 bits (306), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 69/195 (35%), Positives = 116/195 (59%), Gaps = 9/195 (4%)
Query: 773 KMKRDFDHVTSRPIS-SPLRSMDESC-MTYECVAFEDESSGEYNAKRQKTQVNANDALVD 830
KMKRD ++ P++ S S+++S T+ E +S+ K QKT++N AL++
Sbjct: 1112 KMKRD---TSAMPLNVSSAGSVNDSLKQTFSIGTPELQSTATSRVKWQKTEIN--HALME 1166
Query: 831 EIKTINNKLVDTVMNFADENGTDEIIYQNGG-GMLIKLSYISMSLSPSLKSLFAASEMTI 889
EI IN +L+DT ++ +++ G G +IK ++ ++++SPSLKS+FA+++M+
Sbjct: 1167 EIHEINQQLIDTELHVCEDDAESFGATSEGTEGTVIKCTFTAVAVSPSLKSMFASAQMSP 1226
Query: 890 VMPVKLLVPADYPKSSPILVDN-DDEQRRLSDISYAVAVAFGCAVDELPEPRSIEAMAMA 948
++P+++LVPA YPK SP+L+D DEQR D+S F + L EP S+ +A
Sbjct: 1227 ILPLRVLVPASYPKCSPVLLDKFPDEQRNSDDLSTKARSKFSILLRGLAEPMSLREIART 1286
Query: 949 WDGCVRRAVTEVAHR 963
WD C R+ + E A +
Sbjct: 1287 WDACARKVIAEYAQQ 1301
>Os12g0245000 Hypothetical protein
Length = 318
Score = 103 bits (257), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 73/195 (37%), Positives = 104/195 (53%), Gaps = 18/195 (9%)
Query: 786 ISSPLRSMDESCMTYECVAFEDESSGEYN-AKRQKTQVNANDALVDEIKTINNKLVDTVM 844
I P +++ + YE ++ + E + KRQK Q + + L+ EI IN +L DTV+
Sbjct: 132 IFHPWKNITDRTSAYELSHIDNLVNHEDDETKRQKEQ-SVHITLLYEINLINEELFDTVI 190
Query: 845 NFADENGTDEIIYQNGGGMLIKLSYISMSLSPSLKSLFAASEMTIVMPVKLLVPADYPKS 904
+ I GG +IK SY ++SL+ ++ FAA + + P KL VPADYP+S
Sbjct: 191 S---------ITGHKHGGTVIKFSYNAVSLAQDMELPFAAYGTSPLKPAKLFVPADYPRS 241
Query: 905 SPILVDNDDE-QRRLSDISYAVAVAFGCAVDELPEPRSIEAMAMAWDGCVRRAVTEVAHR 963
SP+ D D++ Q S IS V F A+ +LP P SI MA W G R VT
Sbjct: 242 SPVYEDGDEQHQGMYSVISGMVDKVFQRALRKLPVPMSIRDMARQW-GISVRTVT----- 295
Query: 964 HGGGTFSSRHNQWRA 978
+GGGTFSS + QW +
Sbjct: 296 NGGGTFSSGYGQWES 310
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.314 0.126 0.362
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 32,622,547
Number of extensions: 1409523
Number of successful extensions: 5035
Number of sequences better than 1.0e-10: 4
Number of HSP's gapped: 5017
Number of HSP's successfully gapped: 6
Length of query: 988
Length of database: 17,035,801
Length adjustment: 111
Effective length of query: 877
Effective length of database: 11,240,047
Effective search space: 9857521219
Effective search space used: 9857521219
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 161 (66.6 bits)