BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0825600 Os03g0825600|AK063312
(317 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os03g0825600 Conserved hypothetical protein 492 e-139
Os10g0378400 Protein of unknown function DUF641, plant doma... 119 3e-27
Os01g0823700 Protein of unknown function DUF641, plant doma... 84 2e-16
Os10g0508100 Protein of unknown function DUF641, plant doma... 82 4e-16
>Os03g0825600 Conserved hypothetical protein
Length = 317
Score = 492 bits (1267), Expect = e-139, Method: Compositional matrix adjust.
Identities = 254/294 (86%), Positives = 254/294 (86%)
Query: 24 YEAALDDLRRQLQAKQAEVDGLKEKLAVASNRRNSRHHPSKHNASGGGGGAPTXXXXXXX 83
YEAALDDLRRQLQAKQAEVDGLKEKLAVASNRRNSRHHPSKHNASGGGGGAPT
Sbjct: 24 YEAALDDLRRQLQAKQAEVDGLKEKLAVASNRRNSRHHPSKHNASGGGGGAPTAELFAAC 83
Query: 84 XXXXXXXXXXXXGHLLQLMRAAGLDLAAATRSLTKIPVSSPQLAKHALEAHVTRVLLVGF 143
GHLLQLMRAAGLDLAAATRSLTKIPVSSPQLAKHALEAHVTRVLLVGF
Sbjct: 84 AEQARAAIRAFAGHLLQLMRAAGLDLAAATRSLTKIPVSSPQLAKHALEAHVTRVLLVGF 143
Query: 144 EHESFYLDGSLSSLLDPAAFRRERYTQFRDMRGMEPAELLGLLPTCPFGRYAASKFAALL 203
EHESFYLDGSLSSLLDPAAFRRERYTQFRDMRGMEPAELLGLLPTCPFGRYAASKFAALL
Sbjct: 144 EHESFYLDGSLSSLLDPAAFRRERYTQFRDMRGMEPAELLGLLPTCPFGRYAASKFAALL 203
Query: 204 PPRVEQAVLGDGEHRRAVEGGAHPRTPFYGEFLRAAKAVWMLHLLAFALETPPSHFEAGR 263
PPRVEQAVLGDGEHRRAVEGGAHPRTPFYGEFLRAAKAVWMLHLLAFALETPPSHFEAGR
Sbjct: 204 PPRVEQAVLGDGEHRRAVEGGAHPRTPFYGEFLRAAKAVWMLHLLAFALETPPSHFEAGR 263
Query: 264 GAEFHPDYMESXXXXXXXXXXXXXXXXXXXXXFRLGNGAVVRARVYLVPRGGRP 317
GAEFHPDYMES FRLGNGAVVRARVYLVPRGGRP
Sbjct: 264 GAEFHPDYMESVAGGRGGGAAGMVVGFAVAPGFRLGNGAVVRARVYLVPRGGRP 317
>Os10g0378400 Protein of unknown function DUF641, plant domain containing protein
Length = 338
Score = 119 bits (297), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 60/178 (33%), Positives = 104/178 (58%), Gaps = 6/178 (3%)
Query: 98 LLQLMRAAGLDLAAATRSLTKIPVSSPQL-AKHALEAHVTRVLLVGFEHESFYLDGSLSS 156
L+ +M+AAG DL AA ++ V + + K+A E+++ + + GF+ ESF + + +
Sbjct: 122 LINMMKAAGWDLDAAANAIEPAVVYTRRAHKKYAFESYICQRMFGGFQEESFSVKAANIT 181
Query: 157 LLDPAAFRRERYTQFRDMRGMEPAELLGLLPTCPFGRYAASKFAALLPPRVEQAVLGDGE 216
+ + A F QF +R M+P ++L P FG++ SK+ L+ P++E + G+ +
Sbjct: 182 VSNEAFFH-----QFLAVRAMDPLDVLSQNPDSVFGKFCRSKYLLLVHPKMEGSFFGNMD 236
Query: 217 HRRAVEGGAHPRTPFYGEFLRAAKAVWMLHLLAFALETPPSHFEAGRGAEFHPDYMES 274
R V G HPRTPFY FL+ AK++W+LH LA++ + F+ +G++F +MES
Sbjct: 237 QRNYVMSGGHPRTPFYQAFLKLAKSIWLLHRLAYSFDPKVKVFQVKKGSDFSEIHMES 294
>Os01g0823700 Protein of unknown function DUF641, plant domain containing protein
Length = 437
Score = 83.6 bits (205), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 54/183 (29%), Positives = 80/183 (43%), Gaps = 18/183 (9%)
Query: 128 KHALEAHVTRVLLVGFEHESFYLDGSLSSLLDPAAFRRERYTQFRDMRGMEPAELLGLLP 187
+A+EA+ ++L+G + E LD + D M +P + L P
Sbjct: 265 NYAVEAYFACMMLMGHKEEYLSLD-----VFDYV------------MSFSDPFDALMKAP 307
Query: 188 TCPFGRYAASKFAALLPPRVEQAVLGDGEHRRAVEGGAHPRTPFYGEFLRAAKAVWMLHL 247
FGR+ K+ A+LPP +E + G+ +HR VE G HPRTPFY F+ ++ VW
Sbjct: 308 DSCFGRFCREKYLAILPPSMEDSFFGNLDHRSFVENGGHPRTPFYQAFVTMSRYVWASLT 367
Query: 248 LAFALETPPSHFEAGRGAEFHPDYMESXXXXXXXXXXXXXXXXXXXXXFRLGNGAVVRAR 307
+A +L F G EF +ME F++G V+R R
Sbjct: 368 VARSLNPRAEMFYVKGGTEFRSKHMECVPSKITKEGDKVSVGFTVMPGFKIG-CTVIRCR 426
Query: 308 VYL 310
VYL
Sbjct: 427 VYL 429
>Os10g0508100 Protein of unknown function DUF641, plant domain containing protein
Length = 470
Score = 82.4 bits (202), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 67/224 (29%), Positives = 102/224 (45%), Gaps = 15/224 (6%)
Query: 98 LLQLMRAAGLDLAAATRSLT-KIPVSSPQLAKHALEAHVTRVLLVGFEHESF--YLDGSL 154
L L+R AG DLAAA ++ + S P ++AL + V + GF+ F D +
Sbjct: 240 LADLLRCAGWDLAAAAAAVYPGVAYSRPGHCRYALLSRVCLSMFDGFDSYQFGGSTDATT 299
Query: 155 SSLLDPAAFRRERYTQFRDMRGMEPAELLGLLPTCPFGRYAASKFAALLPPRVEQAVLGD 214
+D A R E QF + +P EL+ P C F ++ K+ L+ P +E ++ G+
Sbjct: 300 LEGIDLAIRRNESLQQFIEHSDADPMELINSSPDCEFAQFCDRKYKQLIHPGIESSLFGN 359
Query: 215 GEH-RRAVEGGAHPRTPFYGEFLRAAKAVWMLHLLAFALETPPSHFEAGRGAEFHPDYME 273
+ + V G A P Y F+ A ++W LH LA+A + F+ G+GAE+ YME
Sbjct: 360 SDCGKLPVLGVA---GPLYELFVAMASSIWTLHRLAWAYDPAVGIFQIGQGAEYSVVYME 416
Query: 274 SXXXXXXXXXXXXXXXX-------XXXXXFRLGNGAVVRARVYL 310
+ FRLG G V++ RVYL
Sbjct: 417 NIVRSKGFSGSKELGKMMRPKVGFTVVPGFRLG-GTVIQCRVYL 459
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.321 0.136 0.407
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 9,977,714
Number of extensions: 417389
Number of successful extensions: 1689
Number of sequences better than 1.0e-10: 6
Number of HSP's gapped: 1682
Number of HSP's successfully gapped: 6
Length of query: 317
Length of database: 17,035,801
Length adjustment: 101
Effective length of query: 216
Effective length of database: 11,762,187
Effective search space: 2540632392
Effective search space used: 2540632392
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 156 (64.7 bits)