BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0744800 Os03g0744800|AK059983
(210 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os03g0744800 emp24/gp25L/p24 family protein 421 e-118
Os08g0532900 emp24/gp25L/p24 family protein 141 3e-34
Os02g0768200 emp24/gp25L/p24 family protein 72 2e-13
Os06g0210100 emp24/gp25L/p24 family protein 72 3e-13
>Os03g0744800 emp24/gp25L/p24 family protein
Length = 210
Score = 421 bits (1083), Expect = e-118, Method: Compositional matrix adjust.
Identities = 202/210 (96%), Positives = 202/210 (96%)
Query: 1 MAVGWRPAMLXXXXXXXXWRGEALSVTVTDTECIHEFVPYEGDTVSGNFVVVDHDIFWSS 60
MAVGWRPAML WRGEALSVTVTDTECIHEFVPYEGDTVSGNFVVVDHDIFWSS
Sbjct: 1 MAVGWRPAMLVVVVAVAAWRGEALSVTVTDTECIHEFVPYEGDTVSGNFVVVDHDIFWSS 60
Query: 61 DHPGIDLTVTSPGGNTVYTLKGKSGDKFEFKAPRGGMYKFCFHNPYGAPETVSFYIHVGH 120
DHPGIDLTVTSPGGNTVYTLKGKSGDKFEFKAPRGGMYKFCFHNPYGAPETVSFYIHVGH
Sbjct: 61 DHPGIDLTVTSPGGNTVYTLKGKSGDKFEFKAPRGGMYKFCFHNPYGAPETVSFYIHVGH 120
Query: 121 IPNEHNLAKDEHLDPINVKIAELKEALESVTAEQKYLKAREARHRHTNESTRRRVMFYTI 180
IPNEHNLAKDEHLDPINVKIAELKEALESVTAEQKYLKAREARHRHTNESTRRRVMFYTI
Sbjct: 121 IPNEHNLAKDEHLDPINVKIAELKEALESVTAEQKYLKAREARHRHTNESTRRRVMFYTI 180
Query: 181 AEYLAFMGASALQVVYIRRLFSKNVAYNRV 210
AEYLAFMGASALQVVYIRRLFSKNVAYNRV
Sbjct: 181 AEYLAFMGASALQVVYIRRLFSKNVAYNRV 210
>Os08g0532900 emp24/gp25L/p24 family protein
Length = 212
Score = 141 bits (356), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 78/209 (37%), Positives = 108/209 (51%), Gaps = 1/209 (0%)
Query: 3 VGWRPAMLXXXXXXXXWR-GEALSVTVTDTECIHEFVPYEGDTVSGNFVVVDHDIFWSSD 61
+ WR L R A+ + EC V YEGDTV +FVV+ D W
Sbjct: 4 LSWRTVCLLVLCTVALLRPAAAIRFVIDREECFSHNVEYEGDTVHVSFVVIKADTPWHYS 63
Query: 62 HPGIDLTVTSPGGNTVYTLKGKSGDKFEFKAPRGGMYKFCFHNPYGAPETVSFYIHVGHI 121
G+DL V P G V + K+ DKFEF + G+++FCF N ETV F +HVGH
Sbjct: 64 EDGVDLVVKDPNGAQVRDSRDKTSDKFEFIVQKRGVHRFCFTNKSPYHETVDFDVHVGHF 123
Query: 122 PNEHNLAKDEHLDPINVKIAELKEALESVTAEQKYLKAREARHRHTNESTRRRVMFYTIA 181
AKDEH P+ +IA+L EAL ++ EQ +L+A+ R NE+ RR + +
Sbjct: 124 SYFDQHAKDEHFAPLFEQIAKLDEALYNIQFEQHWLEAQTDRQAILNENMSRRAVHKALL 183
Query: 182 EYLAFMGASALQVVYIRRLFSKNVAYNRV 210
E A + AS +QV +RRLF + + +RV
Sbjct: 184 ESAALIAASVIQVYLLRRLFERKLGTSRV 212
>Os02g0768200 emp24/gp25L/p24 family protein
Length = 218
Score = 72.4 bits (176), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 50/187 (26%), Positives = 93/187 (49%), Gaps = 13/187 (6%)
Query: 24 LSVTVTDTECIHEFVPYEGDTVSGNFVVVDHDIFWSS---DHPGIDLTVTSPGGNTVYTL 80
L + + T+C+ E + S V+ D+ + + S HP I + VTSP GNT++
Sbjct: 34 LDLPQSGTKCVSEEIQ------SNVVVLADYALMYESHPSSHPTIAVKVTSPYGNTLHHN 87
Query: 81 KGKSGDKFEFKAPRGGMYKFCF---HNPYGAPETVSFYIHVGHIPNEHN-LAKDEHLDPI 136
+ + +F F G Y CF G+ +++ +G + + +AK E ++ +
Sbjct: 88 ENATVGQFAFTTSEAGNYLACFWIDSAEKGSGISINLDWKIGIAAKDWDVIAKKEKIEGV 147
Query: 137 NVKIAELKEALESVTAEQKYLKAREARHRHTNESTRRRVMFYTIAEYLAFMGASALQVVY 196
+++ +L+ A++S+ YLKAREA R +E T RV +++I + S LQ+ +
Sbjct: 148 ELELRKLEVAVQSIHQNMIYLKAREAEMRTVSEKTNARVAWFSILSLSVCIVVSILQLWH 207
Query: 197 IRRLFSK 203
++ F K
Sbjct: 208 LQGYFQK 214
>Os06g0210100 emp24/gp25L/p24 family protein
Length = 232
Score = 72.0 bits (175), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 54/188 (28%), Positives = 96/188 (51%), Gaps = 15/188 (7%)
Query: 24 LSVTVTDTECIHEFVPYEGDTVSGNFVVV-DHDIFWSS---DHPGIDLTVTSPGGNTVYT 79
L + T T+C+ E + N VV+ D+ + + S HP + + VTSP GNTV+
Sbjct: 48 LDLPPTGTKCVSE-------EIQPNVVVLADYALMYESHPTAHPTVAVKVTSPYGNTVHH 100
Query: 80 LKGKSGDKFEFKAPRGGMYKFCF--HNP-YGAPETVSFYIHVGHIPNEHN-LAKDEHLDP 135
+ + +F F G Y CF +P G+ +++ +G + + +AK E ++
Sbjct: 101 NENATTGQFAFTTSEAGNYLACFWLDSPEKGSGVSLNLDWKIGIAAKDWDTVAKKEKIEG 160
Query: 136 INVKIAELKEALESVTAEQKYLKAREARHRHTNESTRRRVMFYTIAEYLAFMGASALQVV 195
+ +++ +L+ A+ES+ YLKAREA R +E T RV +++I + S LQ+
Sbjct: 161 VELELRKLEAAVESIHHNLLYLKAREAEMRTVSEKTNSRVAWFSILSLGVCIVVSVLQLW 220
Query: 196 YIRRLFSK 203
+++ F K
Sbjct: 221 HLQGFFRK 228
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.321 0.136 0.418
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 7,079,410
Number of extensions: 300211
Number of successful extensions: 559
Number of sequences better than 1.0e-10: 4
Number of HSP's gapped: 559
Number of HSP's successfully gapped: 4
Length of query: 210
Length of database: 17,035,801
Length adjustment: 96
Effective length of query: 114
Effective length of database: 12,023,257
Effective search space: 1370651298
Effective search space used: 1370651298
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 154 (63.9 bits)