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Os08g0532900

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : emp24/gp25L/p24 family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 12.6 (0.018) R2 : 0.203
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.407 (0.0378) R2dN8 : 0.262 R2N8 : 0.203
σ : 0.338
deviance : 52.53
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
25.16 0.236 12.6 0.43 0.372 0.375 -0.325 -0.588 0.379 20.5 18.81 2744 -- --
25.45 0.235 12.6 0.501 0.353 0.48 -0.268 -- 0.407 20.4 18.4 2777 -- --
25.42 0.235 12.6 0.443 0.365 0.414 -- -0.515 0.38 20.5 18.7 2750 -- --
25.53 0.235 12.6 0.49 0.378 0.576 -- -- 0.391 20.5 18.42 2784 -- --
32.62 0.266 12.6 0.451 -- 0.367 -- -0.648 0.377 -- 18.9 2279 -- --
29.64 0.255 12.6 0.743 0.368 -- -0.282 -- 0.494 20.8 -- -- -- --
29.9 0.256 12.6 0.752 0.369 -- -- -- 0.494 20.8 -- -- -- --
32.76 0.267 12.6 0.496 -- 0.574 -- -- 0.39 -- 18.4 2241 -- --
27.43 0.244 12.7 -- 0.39 0.764 -- -- 0.269 20.9 16.3 41482 -- --
37.62 0.287 12.6 0.752 -- -- -- -- 0.491 -- -- -- -- --
44.82 0.313 12.6 -- 0.367 -- -- -- 0.41 20.9 -- -- -- --
34.83 0.275 12.6 -- -- 0.731 -- -- 0.277 -- 16 42594 -- --
52.53 0.338 12.6 -- -- -- -- -- 0.407 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 24.27 wind 1.0 43200 > th dose independent rect. 9 2
2 24.33 temperature 20.0 14400 < th dose independent rect. 20 1
3 24.34 temperature 20.0 14400 < th dose independent rect. 20 3
6 24.42 temperature 20.0 14400 > th dose independent rect. 20 3
12 24.44 wind 1.0 43200 < th dose independent rect. 9 2
87 24.75 wind 1.0 43200 > th dose independent rect. 2 1
114 24.80 temperature 20.0 14400 > th dose independent sin 15 NA
118 24.81 temperature 20.0 14400 < th dose independent sin 15 NA
145 24.86 humidity 80.0 43200 > th dose independent rect. 6 1
146 24.86 humidity 80.0 43200 < th dose independent rect. 6 1
153 24.87 wind 1.0 43200 < th dose independent rect. 2 1
174 24.91 precipitation 0.1 43200 > th dose independent rect. 16 4
189 24.93 precipitation 0.1 43200 < th dose independent rect. 16 4
195 24.93 precipitation 0.1 43200 < th dose dependent rect. 16 4
222 24.98 wind 1.0 43200 > th dose independent rect. 10 15
225 24.98 precipitation 0.1 43200 > th dose dependent rect. 16 6
241 25.00 precipitation 0.1 43200 > th dose dependent rect. 14 6
287 25.06 temperature 20.0 14400 > th dose independent rect. 18 15
296 25.06 precipitation 0.1 43200 > th dose dependent rect. 13 9
309 25.07 precipitation 0.1 43200 > th dose dependent rect. 16 1
328 25.09 wind 1.0 43200 < th dose independent rect. 10 15
337 25.09 wind 1.0 43200 < th dose dependent rect. 9 16
339 25.10 wind 1.0 14400 > th dose independent rect. 23 3
365 25.11 wind 1.0 43200 > th dose independent rect. 8 17
380 25.12 wind 1.0 43200 > th dose independent rect. 15 11
456 25.15 precipitation 0.1 43200 > th dose dependent rect. 19 3
476 25.16 wind 1.0 43200 < th dose dependent rect. 2 1
541 25.19 temperature 25.0 14400 < th dose dependent rect. 20 1
543 25.20 wind 3.0 43200 > th dose independent rect. 13 3
560 25.20 wind 1.0 43200 < th dose dependent rect. 11 1
570 25.21 wind 1.0 43200 < th dose independent rect. 13 13
588 25.22 temperature 20.0 14400 > th dose independent no NA NA
589 25.22 temperature 20.0 14400 < th dose independent rect. 24 1
591 25.22 humidity 90.0 14400 > th dose independent rect. 21 2
592 25.22 wind 3.0 43200 < th dose independent rect. 13 3
593 25.22 precipitation 0.1 14400 > th dose independent rect. 7 3
611 25.22 temperature 25.0 14400 < th dose dependent rect. 8 2
613 25.22 precipitation 0.1 14400 > th dose dependent rect. 7 3
640 25.23 temperature 25.0 14400 < th dose dependent rect. 7 8
641 25.23 temperature 25.0 14400 < th dose dependent rect. 8 14
654 25.24 wind 1.0 43200 < th dose independent rect. 8 17
683 25.25 wind 1.0 43200 < th dose independent rect. 15 11
712 25.26 wind 1.0 14400 < th dose independent rect. 21 5
733 25.27 temperature 20.0 14400 < th dose independent no NA NA
748 25.27 temperature 25.0 14400 < th dose dependent rect. 14 8
767 25.28 wind 9.0 43200 < th dose independent rect. 10 2
768 25.28 radiation 20.0 43200 > th dose independent rect. 9 2
778 25.28 temperature 20.0 14400 < th dose independent rect. 24 23
779 25.28 temperature 25.0 14400 < th dose dependent sin 20 NA
783 25.28 wind 7.0 43200 > th dose dependent rect. 10 3
801 25.29 wind 1.0 14400 < th dose independent rect. 19 7
818 25.29 radiation 1.0 14400 < th dose dependent rect. 7 1
919 25.33 wind 9.0 43200 < th dose independent rect. 16 21
925 25.33 wind 1.0 43200 > th dose dependent rect. 5 1
927 25.33 temperature 25.0 14400 < th dose dependent rect. 13 1
929 25.33 humidity 80.0 43200 > th dose dependent rect. 12 1
939 25.34 humidity 80.0 14400 > th dose independent rect. 13 1
940 25.34 wind 9.0 43200 > th dose independent rect. 10 2
944 25.34 precipitation 0.1 14400 < th dose independent rect. 7 3
951 25.34 wind 9.0 43200 < th dose independent rect. 19 20
958 25.34 precipitation 0.1 14400 < th dose dependent rect. 7 3
979 25.35 radiation 30.0 14400 > th dose independent rect. 7 1