BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os08g0532900 Os08g0532900|AK073679
(212 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os08g0532900 emp24/gp25L/p24 family protein 384 e-107
Os03g0744800 emp24/gp25L/p24 family protein 128 4e-30
Os09g0507600 Conserved hypothetical protein 74 7e-14
>Os08g0532900 emp24/gp25L/p24 family protein
Length = 212
Score = 384 bits (986), Expect = e-107, Method: Compositional matrix adjust.
Identities = 187/212 (88%), Positives = 187/212 (88%)
Query: 1 MEVLSWRXXXXXXXXXXXXXRPAAAIRFVIDREECFSHNVEYEGDTVHVSFVVIKADTPW 60
MEVLSWR RPAAAIRFVIDREECFSHNVEYEGDTVHVSFVVIKADTPW
Sbjct: 1 MEVLSWRTVCLLVLCTVALLRPAAAIRFVIDREECFSHNVEYEGDTVHVSFVVIKADTPW 60
Query: 61 HYSEDGVDLVVKDPNGAQVRDSRDKTSDKFEFIVQKRGVHRFCFTNKSPYHETVDFDVHV 120
HYSEDGVDLVVKDPNGAQVRDSRDKTSDKFEFIVQKRGVHRFCFTNKSPYHETVDFDVHV
Sbjct: 61 HYSEDGVDLVVKDPNGAQVRDSRDKTSDKFEFIVQKRGVHRFCFTNKSPYHETVDFDVHV 120
Query: 121 GHFSYFDQHAKDEHFAPLFEQIAKLDEALYNIQFEQHWLEAQTDRQAILNENMSRRAVHK 180
GHFSYFDQHAKDEHFAPLFEQIAKLDEALYNIQFEQHWLEAQTDRQAILNENMSRRAVHK
Sbjct: 121 GHFSYFDQHAKDEHFAPLFEQIAKLDEALYNIQFEQHWLEAQTDRQAILNENMSRRAVHK 180
Query: 181 XXXXXXXXXXXXVIQVYLLRRLFERKLGTSRV 212
VIQVYLLRRLFERKLGTSRV
Sbjct: 181 ALLESAALIAASVIQVYLLRRLFERKLGTSRV 212
>Os03g0744800 emp24/gp25L/p24 family protein
Length = 210
Score = 128 bits (321), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 70/188 (37%), Positives = 97/188 (51%)
Query: 25 AIRFVIDREECFSHNVEYEGDTVHVSFVVIKADTPWHYSEDGVDLVVKDPNGAQVRDSRD 84
A+ + EC V YEGDTV +FVV+ D W G+DL V P G V +
Sbjct: 23 ALSVTVTDTECIHEFVPYEGDTVSGNFVVVDHDIFWSSDHPGIDLTVTSPGGNTVYTLKG 82
Query: 85 KTSDKFEFIVQKRGVHRFCFTNKSPYHETVDFDVHVGHFSYFDQHAKDEHFAPLFEQIAK 144
K+ DKFEF + G+++FCF N ETV F +HVGH AKDEH P+ +IA+
Sbjct: 83 KSGDKFEFKAPRGGMYKFCFHNPYGAPETVSFYIHVGHIPNEHNLAKDEHLDPINVKIAE 142
Query: 145 LDEALYNIQFEQHWLEAQTDRQAILNENMSRRAVHKXXXXXXXXXXXXVIQVYLLRRLFE 204
L EAL ++ EQ +L+A+ R NE+ RR + +QV +RRLF
Sbjct: 143 LKEALESVTAEQKYLKAREARHRHTNESTRRRVMFYTIAEYLAFMGASALQVVYIRRLFS 202
Query: 205 RKLGTSRV 212
+ + +RV
Sbjct: 203 KNVAYNRV 210
>Os09g0507600 Conserved hypothetical protein
Length = 57
Score = 74.3 bits (181), Expect = 7e-14, Method: Composition-based stats.
Identities = 34/36 (94%), Positives = 35/36 (97%)
Query: 133 EHFAPLFEQIAKLDEALYNIQFEQHWLEAQTDRQAI 168
EHF+ LFEQIAKLDEALYNIQFEQHWLEAQTDRQAI
Sbjct: 12 EHFSALFEQIAKLDEALYNIQFEQHWLEAQTDRQAI 47
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.324 0.137 0.420
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 6,012,920
Number of extensions: 233327
Number of successful extensions: 480
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 479
Number of HSP's successfully gapped: 3
Length of query: 212
Length of database: 17,035,801
Length adjustment: 97
Effective length of query: 115
Effective length of database: 11,971,043
Effective search space: 1376669945
Effective search space used: 1376669945
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 154 (63.9 bits)