Os09g0507600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os09g0507600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 64.51 | 0.377 | 6.62 | -1.25 | 0.27 | -1.74 | -0.0848 | -0.535 | 0.281 | 1.24 | 18.5 | 3250 | -- | -- |
| 64.75 | 0.375 | 6.64 | -1.3 | 0.269 | -1.59 | -0.0756 | -- | 0.267 | 1.25 | 18.4 | 3258 | -- | -- |
| 64.53 | 0.374 | 6.62 | -1.25 | 0.27 | -1.74 | -- | -0.534 | 0.282 | 1.3 | 18.5 | 3258 | -- | -- |
| 64.78 | 0.375 | 6.64 | -1.29 | 0.27 | -1.59 | -- | -- | 0.273 | 1.31 | 18.42 | 3261 | -- | -- |
| 68.32 | 0.385 | 6.62 | -1.29 | -- | -1.82 | -- | -0.64 | 0.27 | -- | 18.4 | 3739 | -- | -- |
| 95.99 | 0.459 | 6.57 | -0.546 | 0.285 | -- | -0.0408 | -- | 0.561 | 1.46 | -- | -- | -- | -- |
| 96 | 0.459 | 6.57 | -0.545 | 0.285 | -- | -- | -- | 0.561 | 1.47 | -- | -- | -- | -- |
| 68.62 | 0.386 | 6.64 | -1.35 | -- | -1.64 | -- | -- | 0.26 | -- | 18.43 | 3739 | -- | -- |
| 93.37 | 0.45 | 6.6 | -- | 0.259 | -0.915 | -- | -- | 0.511 | 1.32 | 17.9 | 3052 | -- | -- |
| 100.99 | 0.47 | 6.57 | -0.533 | -- | -- | -- | -- | 0.567 | -- | -- | -- | -- | -- |
| 103.82 | 0.477 | 6.56 | -- | 0.276 | -- | -- | -- | 0.622 | 1.41 | -- | -- | -- | -- |
| 91.98 | 0.447 | 6.6 | -- | -- | -0.614 | -- | -- | 0.43 | -- | 22.5 | 2222 | -- | -- |
| 108.49 | 0.486 | 6.55 | -- | -- | -- | -- | -- | 0.626 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 64.16 | temperature | 15 | 43200 | > th | dose independent | rect. | 5 | 1 |
| 2 | 64.41 | humidity | 60 | 43200 | < th | dose dependent | rect. | 8 | 1 |
| 4 | 64.81 | wind | 7 | 43200 | < th | dose independent | rect. | 9 | 1 |
| 6 | 64.89 | wind | 7 | 43200 | > th | dose independent | rect. | 24 | 1 |
| 7 | 64.90 | wind | 7 | 43200 | > th | dose independent | rect. | 9 | 1 |
| 8 | 64.94 | radiation | 20 | 14400 | > th | dose dependent | rect. | 17 | 14 |
| 10 | 65.03 | atmosphere | 1015 | 43200 | < th | dose independent | rect. | 14 | 1 |
| 11 | 65.05 | atmosphere | 1015 | 43200 | < th | dose independent | rect. | 13 | 3 |
| 13 | 65.07 | temperature | 15 | 43200 | < th | dose independent | rect. | 5 | 1 |
| 14 | 65.07 | atmosphere | 1015 | 43200 | > th | dose independent | rect. | 12 | 3 |
| 27 | 65.13 | radiation | 20 | 14400 | > th | dose dependent | rect. | 6 | 1 |
| 42 | 65.15 | radiation | 30 | 14400 | > th | dose independent | rect. | 16 | 16 |
| 45 | 65.19 | humidity | 50 | 43200 | < th | dose dependent | rect. | 11 | 2 |
| 46 | 65.20 | humidity | 60 | 43200 | < th | dose independent | rect. | 8 | 1 |
| 48 | 65.20 | radiation | 30 | 14400 | > th | dose dependent | rect. | 16 | 16 |
| 51 | 65.22 | atmosphere | 1015 | 43200 | < th | dose independent | rect. | 14 | 7 |
| 58 | 65.27 | wind | 7 | 43200 | < th | dose independent | rect. | 24 | 1 |
| 63 | 65.33 | atmosphere | 1015 | 43200 | > th | dose independent | rect. | 12 | 9 |
| 66 | 65.38 | radiation | 30 | 14400 | > th | dose independent | rect. | 7 | 1 |
| 93 | 65.51 | radiation | 30 | 14400 | < th | dose independent | rect. | 18 | 14 |
| 96 | 65.52 | wind | 5 | 43200 | > th | dose dependent | rect. | 24 | 1 |
| 97 | 65.52 | humidity | 50 | 43200 | < th | dose dependent | rect. | 20 | 17 |
| 98 | 65.53 | radiation | 30 | 14400 | < th | dose independent | rect. | 7 | 1 |
| 101 | 65.53 | radiation | 30 | 14400 | < th | dose independent | rect. | 20 | 12 |
| 104 | 65.54 | radiation | 30 | 14400 | < th | dose independent | rect. | 2 | 6 |
| 108 | 65.54 | humidity | 50 | 43200 | < th | dose dependent | rect. | 8 | 5 |
| 112 | 65.55 | radiation | 30 | 14400 | < th | dose independent | rect. | 22 | 10 |
| 133 | 65.59 | humidity | 50 | 43200 | < th | dose independent | rect. | 11 | 1 |
| 177 | 65.78 | temperature | 20 | 4320 | < th | dose dependent | rect. | 23 | 1 |
| 192 | 65.79 | atmosphere | 1015 | 43200 | > th | dose dependent | rect. | 23 | 1 |
| 203 | 65.87 | humidity | 90 | 14400 | < th | dose independent | rect. | 23 | 2 |
| 238 | 65.98 | humidity | 50 | 43200 | < th | dose dependent | sin | 8 | NA |
| 244 | 66.00 | atmosphere | 1015 | 43200 | > th | dose independent | rect. | 17 | 4 |
| 248 | 66.02 | temperature | 10 | 1440 | > th | dose dependent | rect. | 21 | 1 |
| 266 | 66.08 | radiation | 1 | 14400 | < th | dose dependent | sin | 10 | NA |
| 285 | 66.11 | radiation | 1 | 14400 | < th | dose dependent | rect. | 3 | 4 |
| 287 | 66.12 | humidity | 50 | 43200 | < th | dose independent | rect. | 7 | 6 |
| 290 | 66.12 | temperature | 30 | 1440 | < th | dose dependent | rect. | 21 | 1 |
| 296 | 66.12 | radiation | 1 | 14400 | < th | dose dependent | rect. | 20 | 11 |
| 301 | 66.14 | atmosphere | 1015 | 43200 | < th | dose independent | sin | 20 | NA |
| 306 | 66.15 | atmosphere | 1015 | 43200 | > th | dose independent | sin | 20 | NA |
| 308 | 66.15 | wind | 7 | 43200 | > th | dose independent | rect. | 5 | 5 |
| 319 | 66.17 | radiation | 1 | 14400 | < th | dose dependent | rect. | 17 | 19 |
| 334 | 66.19 | temperature | 30 | 1440 | < th | dose dependent | rect. | 20 | 3 |
| 343 | 66.21 | humidity | 50 | 43200 | > th | dose independent | rect. | 20 | 16 |
| 353 | 66.23 | wind | 7 | 43200 | < th | dose independent | rect. | 5 | 5 |
| 375 | 66.25 | humidity | 50 | 43200 | < th | dose independent | rect. | 20 | 17 |
| 391 | 66.26 | radiation | 1 | 14400 | < th | dose dependent | rect. | 17 | 16 |
| 426 | 66.30 | humidity | 50 | 43200 | > th | dose independent | rect. | 11 | 1 |
| 434 | 66.30 | radiation | 1 | 14400 | < th | dose dependent | rect. | 3 | 9 |
| 453 | 66.31 | radiation | 1 | 14400 | < th | dose dependent | rect. | 20 | 17 |
| 454 | 66.32 | atmosphere | 1015 | 43200 | < th | dose independent | rect. | 19 | 1 |
| 475 | 66.33 | humidity | 50 | 43200 | > th | dose independent | rect. | 7 | 6 |
| 597 | 66.39 | radiation | 1 | 14400 | < th | dose dependent | rect. | 8 | 23 |
| 606 | 66.40 | temperature | 10 | 1440 | > th | dose dependent | rect. | 14 | 16 |
| 624 | 66.41 | humidity | 50 | 43200 | < th | dose dependent | rect. | 11 | 11 |
| 632 | 66.41 | humidity | 50 | 43200 | < th | dose dependent | rect. | 11 | 22 |
| 673 | 66.44 | humidity | 60 | 43200 | < th | dose dependent | rect. | 21 | 12 |
| 690 | 66.45 | wind | 7 | 43200 | > th | dose independent | rect. | 22 | 14 |
| 705 | 66.45 | radiation | 1 | 14400 | < th | dose dependent | rect. | 10 | 23 |
| 723 | 66.46 | radiation | 1 | 14400 | < th | dose dependent | rect. | 4 | 15 |
| 735 | 66.46 | radiation | 1 | 14400 | < th | dose dependent | rect. | 24 | 19 |
| 741 | 66.47 | humidity | 50 | 43200 | < th | dose independent | rect. | 13 | 1 |
| 742 | 66.47 | wind | 7 | 43200 | < th | dose independent | rect. | 8 | 4 |
| 749 | 66.47 | radiation | 1 | 14400 | < th | dose dependent | no | NA | NA |
| 795 | 66.48 | humidity | 60 | 43200 | > th | dose independent | rect. | 8 | 1 |
| 808 | 66.48 | humidity | 50 | 43200 | < th | dose dependent | rect. | 8 | 14 |
| 857 | 66.50 | wind | 7 | 43200 | > th | dose independent | rect. | 24 | 12 |
| 869 | 66.50 | temperature | 30 | 1440 | < th | dose dependent | rect. | 14 | 16 |
| 928 | 66.52 | humidity | 50 | 43200 | < th | dose dependent | no | NA | NA |
| 967 | 66.53 | humidity | 50 | 43200 | > th | dose independent | rect. | 2 | 12 |
| 998 | 66.54 | wind | 7 | 43200 | < th | dose independent | rect. | 22 | 16 |