BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0712800 Os03g0712800|AK063913
(370 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os03g0712800 Similar to Glutamine synthetase root isozyme 2... 718 0.0
Os02g0735200 Glutamine synthetase shoot isozyme (EC 6.3.1.2... 600 e-172
Os03g0223400 Glutamine synthetase root isozyme (EC 6.3.1.2)... 582 e-166
Os04g0659100 Glutamine synthetase shoot isozyme, chloroplas... 539 e-153
>Os03g0712800 Similar to Glutamine synthetase root isozyme 2 (EC 6.3.1.2)
(Glutamate--ammonia ligase)
Length = 370
Score = 718 bits (1854), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 352/370 (95%), Positives = 352/370 (95%)
Query: 1 MSSSLLTDLVNLDLSESTDKVIAEYIWVGGTGMDVRSKARTLSGPVDDPSKLPKWNFDGS 60
MSSSLLTDLVNLDLSESTDKVIAEYIWVGGTGMDVRSKARTLSGPVDDPSKLPKWNFDGS
Sbjct: 1 MSSSLLTDLVNLDLSESTDKVIAEYIWVGGTGMDVRSKARTLSGPVDDPSKLPKWNFDGS 60
Query: 61 STGQATGDDSEVILHPQAIFRDPFRKGKNILVMCDCYAPNGEPIPTNNRYNAARIFSHPD 120
STGQATGDDSEVILHPQAIFRDPFRKGKNILVMCDCYAPNGEPIPTNNRYNAARIFSHPD
Sbjct: 61 STGQATGDDSEVILHPQAIFRDPFRKGKNILVMCDCYAPNGEPIPTNNRYNAARIFSHPD 120
Query: 121 VKAEEPWYGIEQEYTLLQKHINXXXXXXXXXXXXXXXXXXCAAGADKSYGRDIVDAHYKA 180
VKAEEPWYGIEQEYTLLQKHIN CAAGADKSYGRDIVDAHYKA
Sbjct: 121 VKAEEPWYGIEQEYTLLQKHINWPLGWPLGGYPGPQGPYYCAAGADKSYGRDIVDAHYKA 180
Query: 181 CLFAGINISGINAEVMPGQWEFQIGPVVGVSAGDHVWVARYILERITEIAGVVVSFDPKP 240
CLFAGINISGINAEVMPGQWEFQIGPVVGVSAGDHVWVARYILERITEIAGVVVSFDPKP
Sbjct: 181 CLFAGINISGINAEVMPGQWEFQIGPVVGVSAGDHVWVARYILERITEIAGVVVSFDPKP 240
Query: 241 IPGDWNGAGAHTNYSTKSMRSNGGYEVIKKAIKKLGMRHREHIAAYGDGNERRLTGRHET 300
IPGDWNGAGAHTNYSTKSMRSNGGYEVIKKAIKKLGMRHREHIAAYGDGNERRLTGRHET
Sbjct: 241 IPGDWNGAGAHTNYSTKSMRSNGGYEVIKKAIKKLGMRHREHIAAYGDGNERRLTGRHET 300
Query: 301 ADINNFVWGVANRGASVRVGRDTEKDGKGYFEDRRPASNMDPYLVTAMIAETTILWEPSH 360
ADINNFVWGVANRGASVRVGRDTEKDGKGYFEDRRPASNMDPYLVTAMIAETTILWEPSH
Sbjct: 301 ADINNFVWGVANRGASVRVGRDTEKDGKGYFEDRRPASNMDPYLVTAMIAETTILWEPSH 360
Query: 361 GHGHGQSNGK 370
GHGHGQSNGK
Sbjct: 361 GHGHGQSNGK 370
>Os02g0735200 Glutamine synthetase shoot isozyme (EC 6.3.1.2) (Glutamate--ammonia
ligase) (Clone lambda-GS28)
Length = 356
Score = 600 bits (1548), Expect = e-172, Method: Compositional matrix adjust.
Identities = 281/353 (79%), Positives = 317/353 (89%)
Query: 6 LTDLVNLDLSESTDKVIAEYIWVGGTGMDVRSKARTLSGPVDDPSKLPKWNFDGSSTGQA 65
LTDLVNL+LS++T+K+IAEYIW+GG+GMD+RSKARTLSGPV DPSKLPKWN+DGSSTGQA
Sbjct: 4 LTDLVNLNLSDTTEKIIAEYIWIGGSGMDLRSKARTLSGPVTDPSKLPKWNYDGSSTGQA 63
Query: 66 TGDDSEVILHPQAIFRDPFRKGKNILVMCDCYAPNGEPIPTNNRYNAARIFSHPDVKAEE 125
G+DSEVIL+PQAIF+DPFRKG NILVMCDCY P GEPIPTN R+NAA+IFS P+V +EE
Sbjct: 64 PGEDSEVILYPQAIFKDPFRKGNNILVMCDCYTPAGEPIPTNKRHNAAKIFSSPEVASEE 123
Query: 126 PWYGIEQEYTLLQKHINXXXXXXXXXXXXXXXXXXCAAGADKSYGRDIVDAHYKACLFAG 185
PWYGIEQEYTLLQK IN C GADKS+GRDIVD+HYKACL+AG
Sbjct: 124 PWYGIEQEYTLLQKDINWPLGWPVGGFPGPQGPYYCGIGADKSFGRDIVDSHYKACLYAG 183
Query: 186 INISGINAEVMPGQWEFQIGPVVGVSAGDHVWVARYILERITEIAGVVVSFDPKPIPGDW 245
INISGIN EVMPGQWEFQ+GP VG+SAGD VWVARYILERITEIAGVVVSFDPKPIPGDW
Sbjct: 184 INISGINGEVMPGQWEFQVGPSVGISAGDQVWVARYILERITEIAGVVVSFDPKPIPGDW 243
Query: 246 NGAGAHTNYSTKSMRSNGGYEVIKKAIKKLGMRHREHIAAYGDGNERRLTGRHETADINN 305
NGAGAHTNYSTKSMR++GGYE+IK AI+KL +RH+EHI+AYG+GNERRLTGRHETADIN
Sbjct: 244 NGAGAHTNYSTKSMRNDGGYEIIKSAIEKLKLRHKEHISAYGEGNERRLTGRHETADINT 303
Query: 306 FVWGVANRGASVRVGRDTEKDGKGYFEDRRPASNMDPYLVTAMIAETTILWEP 358
F WGVANRGASVRVGR+TE++GKGYFEDRRPASNMDPY+VT+MIAETTI+W+P
Sbjct: 304 FSWGVANRGASVRVGRETEQNGKGYFEDRRPASNMDPYIVTSMIAETTIIWKP 356
>Os03g0223400 Glutamine synthetase root isozyme (EC 6.3.1.2) (Glutamate--ammonia
ligase) (Clone lambda-GS8)
Length = 357
Score = 582 bits (1500), Expect = e-166, Method: Compositional matrix adjust.
Identities = 271/352 (76%), Positives = 310/352 (88%)
Query: 6 LTDLVNLDLSESTDKVIAEYIWVGGTGMDVRSKARTLSGPVDDPSKLPKWNFDGSSTGQA 65
LTDLVNL+LS+ +DK+IAEYIWVGG+G+D+RSKART+ GP+ D S+LPKWN+DGSSTGQA
Sbjct: 4 LTDLVNLNLSDCSDKIIAEYIWVGGSGIDLRSKARTVKGPITDVSQLPKWNYDGSSTGQA 63
Query: 66 TGDDSEVILHPQAIFRDPFRKGKNILVMCDCYAPNGEPIPTNNRYNAARIFSHPDVKAEE 125
G+DSEVIL+PQAIF+DPFR+G NILVMCDCY P GEPIPTN R++AA+IFSHPDV AE
Sbjct: 64 PGEDSEVILYPQAIFKDPFRRGDNILVMCDCYTPQGEPIPTNKRHSAAKIFSHPDVVAEV 123
Query: 126 PWYGIEQEYTLLQKHINXXXXXXXXXXXXXXXXXXCAAGADKSYGRDIVDAHYKACLFAG 185
PWYGIEQEYTLLQK +N CAAGA+K++GRDIVDAHYKAC++AG
Sbjct: 124 PWYGIEQEYTLLQKDVNWPLGWPVGGFPGPQGPYYCAAGAEKAFGRDIVDAHYKACIYAG 183
Query: 186 INISGINAEVMPGQWEFQIGPVVGVSAGDHVWVARYILERITEIAGVVVSFDPKPIPGDW 245
INISGIN EVMPGQWEFQ+GP VG++A D VWVARYILER+TE+AGVV+S DPKPIPGDW
Sbjct: 184 INISGINGEVMPGQWEFQVGPSVGIAAADQVWVARYILERVTEVAGVVLSLDPKPIPGDW 243
Query: 246 NGAGAHTNYSTKSMRSNGGYEVIKKAIKKLGMRHREHIAAYGDGNERRLTGRHETADINN 305
NGAGAHTN+STKSMR GGYEVIKKAI KL +RH+EHIAAYG+GNERRLTGRHETADIN
Sbjct: 244 NGAGAHTNFSTKSMREPGGYEVIKKAIDKLALRHKEHIAAYGEGNERRLTGRHETADINT 303
Query: 306 FVWGVANRGASVRVGRDTEKDGKGYFEDRRPASNMDPYLVTAMIAETTILWE 357
F WGVANRGAS+RVGRDTEK+GKGYFEDRRPASNMDPY+VT MIAETT+LW+
Sbjct: 304 FKWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTGMIAETTLLWK 355
>Os04g0659100 Glutamine synthetase shoot isozyme, chloroplast precursor (EC
6.3.1.2) (Glutamate--ammonia ligase) (Clone lambda-GS31)
Length = 428
Score = 539 bits (1388), Expect = e-153, Method: Compositional matrix adjust.
Identities = 249/354 (70%), Positives = 293/354 (82%)
Query: 6 LTDLVNLDLSESTDKVIAEYIWVGGTGMDVRSKARTLSGPVDDPSKLPKWNFDGSSTGQA 65
+ L+N+D + TDK+IAEYIWVGGTG+D+RSK+RT+S PV+DPS+LPKWN+DGSSTGQA
Sbjct: 60 MEQLLNMDTTPFTDKIIAEYIWVGGTGIDLRSKSRTISKPVEDPSELPKWNYDGSSTGQA 119
Query: 66 TGDDSEVILHPQAIFRDPFRKGKNILVMCDCYAPNGEPIPTNNRYNAARIFSHPDVKAEE 125
G+DSEVIL+PQAIF+DPFR G NILVMCD Y P GEPIPTN R AA++FS P V ++
Sbjct: 120 PGEDSEVILYPQAIFKDPFRGGNNILVMCDTYTPAGEPIPTNKRNRAAQVFSDPKVVSQV 179
Query: 126 PWYGIEQEYTLLQKHINXXXXXXXXXXXXXXXXXXCAAGADKSYGRDIVDAHYKACLFAG 185
PW+GIEQEYTLLQ+ +N CA G+DKS+GRDI DAHYKACL+AG
Sbjct: 180 PWFGIEQEYTLLQRDVNWPLGWPVGGYPGPQGPYYCAVGSDKSFGRDISDAHYKACLYAG 239
Query: 186 INISGINAEVMPGQWEFQIGPVVGVSAGDHVWVARYILERITEIAGVVVSFDPKPIPGDW 245
INISG N EVMPGQWE+Q+GP VG+ AGDH+W++RYILERITE AGVV++ DPKPI GDW
Sbjct: 240 INISGTNGEVMPGQWEYQVGPSVGIEAGDHIWISRYILERITEQAGVVLTLDPKPIQGDW 299
Query: 246 NGAGAHTNYSTKSMRSNGGYEVIKKAIKKLGMRHREHIAAYGDGNERRLTGRHETADINN 305
NGAG HTNYSTKSMR +GG+EVIKKAI L +RH HI+AYG+GNERRLTG HETA I+N
Sbjct: 300 NGAGCHTNYSTKSMREDGGFEVIKKAILNLSLRHDLHISAYGEGNERRLTGLHETASIDN 359
Query: 306 FVWGVANRGASVRVGRDTEKDGKGYFEDRRPASNMDPYLVTAMIAETTILWEPS 359
F WGVANRG S+RVGRDTE GKGY EDRRPASNMDPY+VTA++AETTILWEP+
Sbjct: 360 FSWGVANRGCSIRVGRDTEAKGKGYLEDRRPASNMDPYVVTALLAETTILWEPT 413
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.316 0.135 0.419
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 13,720,858
Number of extensions: 617354
Number of successful extensions: 1263
Number of sequences better than 1.0e-10: 4
Number of HSP's gapped: 1259
Number of HSP's successfully gapped: 4
Length of query: 370
Length of database: 17,035,801
Length adjustment: 102
Effective length of query: 268
Effective length of database: 11,709,973
Effective search space: 3138272764
Effective search space used: 3138272764
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 157 (65.1 bits)