Os03g0712800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Glutamine synthetase root isozyme 2 (EC 6.3.1.2) (Glutamate--ammonia ligase).
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Os03g0712800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Glutamine synthetase root isozyme 2 (EC 6.3.1.2) (Glutamate--ammonia ligase).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = atmosphere,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 126.23 | 0.528 | 2.95 | 0.24 | 0.132 | 1.08 | 0.314 | 2.03 | 0.166 | 4.26 | 1015 | 4787 | -- | -- |
| 130.57 | 0.532 | 2.92 | 0.406 | 0.144 | 0.643 | 0.217 | -- | 0.209 | 3.53 | 1013 | 4649 | -- | -- |
| 126.47 | 0.524 | 2.95 | 0.235 | 0.134 | 1.04 | -- | 1.92 | 0.164 | 3.57 | 1015 | 4783 | -- | -- |
| 130.7 | 0.532 | 2.92 | 0.405 | 0.143 | 0.643 | -- | -- | 0.206 | 3.61 | 1013 | 4649 | -- | -- |
| 127.48 | 0.526 | 2.95 | 0.239 | -- | 1.03 | -- | 1.93 | 0.167 | -- | 1015 | 4794 | -- | -- |
| 139.94 | 0.555 | 2.94 | 0.308 | 0.125 | -- | 0.331 | -- | 0.118 | 4.07 | -- | -- | -- | -- |
| 140.22 | 0.555 | 2.94 | 0.304 | 0.127 | -- | -- | -- | 0.116 | 3.35 | -- | -- | -- | -- |
| 131.82 | 0.535 | 2.92 | 0.42 | -- | 0.618 | -- | -- | 0.212 | -- | 1013 | 4783 | -- | -- |
| 134.69 | 0.541 | 2.93 | -- | 0.153 | 0.614 | -- | -- | 0.151 | 3.61 | 1014 | 4489 | -- | -- |
| 141.12 | 0.555 | 2.94 | 0.309 | -- | -- | -- | -- | 0.12 | -- | -- | -- | -- | -- |
| 142.64 | 0.559 | 2.95 | -- | 0.133 | -- | -- | -- | 0.0827 | 3.35 | -- | -- | -- | -- |
| 135.98 | 0.543 | 2.94 | -- | -- | 0.598 | -- | -- | 0.153 | -- | 1014 | 4509 | -- | -- |
| 143.64 | 0.559 | 2.95 | -- | -- | -- | -- | -- | 0.0856 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 124.56 | atmosphere | 1015.0 | 4320 | > th | dose dependent | rect. | 6 | 1 |
| 3 | 124.63 | atmosphere | 1015.0 | 4320 | < th | dose independent | rect. | 7 | 1 |
| 5 | 124.68 | atmosphere | 1015.0 | 4320 | > th | dose independent | rect. | 6 | 1 |
| 19 | 125.13 | atmosphere | 1015.0 | 4320 | > th | dose dependent | rect. | 6 | 14 |
| 50 | 125.43 | atmosphere | 1015.0 | 4320 | > th | dose independent | rect. | 6 | 14 |
| 58 | 125.47 | atmosphere | 1015.0 | 4320 | < th | dose independent | rect. | 6 | 13 |
| 96 | 125.64 | atmosphere | 1015.0 | 4320 | > th | dose dependent | sin | 0 | NA |
| 137 | 125.71 | atmosphere | 1015.0 | 4320 | > th | dose dependent | rect. | 9 | 1 |
| 196 | 125.92 | atmosphere | 1015.0 | 4320 | > th | dose dependent | rect. | 13 | 1 |
| 206 | 125.95 | atmosphere | 1015.0 | 4320 | < th | dose independent | rect. | 12 | 2 |
| 230 | 125.98 | atmosphere | 1015.0 | 4320 | > th | dose independent | rect. | 13 | 1 |
| 354 | 126.18 | atmosphere | 1015.0 | 4320 | > th | dose independent | sin | 0 | NA |
| 369 | 126.23 | atmosphere | 1015.0 | 4320 | < th | dose independent | sin | 0 | NA |
| 390 | 126.30 | atmosphere | 1015.0 | 4320 | < th | dose independent | rect. | 19 | 1 |
| 483 | 126.75 | humidity | 60.0 | 90 | < th | dose dependent | rect. | 9 | 1 |
| 518 | 126.88 | wind | 1.0 | 90 | < th | dose independent | rect. | 16 | 1 |
| 520 | 126.88 | wind | 1.0 | 90 | < th | dose dependent | rect. | 16 | 1 |
| 562 | 127.07 | humidity | 50.0 | 4320 | < th | dose dependent | rect. | 14 | 2 |
| 563 | 127.08 | humidity | 60.0 | 90 | < th | dose independent | rect. | 9 | 1 |
| 581 | 127.10 | wind | 1.0 | 720 | < th | dose independent | rect. | 18 | 1 |
| 649 | 127.37 | humidity | 50.0 | 4320 | < th | dose independent | rect. | 13 | 4 |
| 671 | 127.44 | atmosphere | 1015.0 | 4320 | > th | dose dependent | no | NA | NA |
| 676 | 127.45 | atmosphere | 1015.0 | 4320 | > th | dose dependent | rect. | 18 | 22 |
| 679 | 127.45 | atmosphere | 1015.0 | 4320 | > th | dose dependent | rect. | 15 | 23 |
| 711 | 127.53 | humidity | 50.0 | 4320 | < th | dose independent | rect. | 13 | 1 |
| 714 | 127.54 | humidity | 50.0 | 4320 | < th | dose independent | rect. | 15 | 1 |
| 727 | 127.59 | humidity | 50.0 | 4320 | > th | dose independent | rect. | 13 | 1 |
| 759 | 127.71 | atmosphere | 1015.0 | 4320 | > th | dose dependent | rect. | 9 | 23 |
| 789 | 127.78 | humidity | 50.0 | 4320 | > th | dose independent | rect. | 12 | 4 |
| 845 | 127.90 | radiation | 1.0 | 43200 | < th | dose dependent | rect. | 23 | 1 |
| 866 | 127.99 | wind | 5.0 | 4320 | > th | dose dependent | rect. | 24 | 1 |
| 872 | 128.01 | wind | 7.0 | 4320 | > th | dose independent | rect. | 24 | 1 |
| 878 | 128.01 | atmosphere | 1005.0 | 10 | > th | dose dependent | rect. | 2 | 4 |
| 897 | 128.02 | radiation | 10.0 | 4320 | < th | dose dependent | rect. | 11 | 3 |
| 935 | 128.16 | wind | 5.0 | 4320 | < th | dose independent | rect. | 24 | 1 |
| 950 | 128.20 | humidity | 50.0 | 4320 | > th | dose independent | rect. | 12 | 16 |
| 951 | 128.21 | humidity | 50.0 | 4320 | > th | dose independent | rect. | 12 | 13 |
| 953 | 128.21 | humidity | 50.0 | 4320 | > th | dose independent | rect. | 12 | 18 |
| 963 | 128.23 | humidity | 50.0 | 4320 | > th | dose independent | rect. | 12 | 21 |
| 967 | 128.24 | humidity | 50.0 | 4320 | > th | dose independent | rect. | 12 | 7 |
| 991 | 128.32 | temperature | 25.0 | 10 | < th | dose dependent | rect. | 13 | 1 |
| 1000 | 128.35 | precipitation | 0.1 | 90 | > th | dose independent | rect. | 13 | 1 |