Os03g0223400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Glutamine synthetase root isozyme (EC 6.3.1.2) (Glutamate--ammonia ligase) (Clone lambda-GS8).
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Os03g0223400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Glutamine synthetase root isozyme (EC 6.3.1.2) (Glutamate--ammonia ligase) (Clone lambda-GS8).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 101.92 | 0.474 | 12.1 | 0.209 | 1.06 | -3.17 | -0.655 | 2.28 | 0.322 | 6.46 | 22.28 | 369 | -- | -- |
| 105.49 | 0.478 | 12.1 | -0.0862 | 1.11 | -3 | -0.668 | -- | 0.273 | 6.29 | 21.97 | 379 | -- | -- |
| 102.67 | 0.472 | 12 | 0.312 | 1.03 | -3.22 | -- | 3.04 | 0.344 | 6.4 | 22.53 | 376 | -- | -- |
| 107.46 | 0.483 | 12.1 | -0.176 | 1.14 | -2.92 | -- | -- | 0.212 | 6.31 | 21.95 | 382 | -- | -- |
| 132.77 | 0.537 | 12 | 0.73 | -- | -4.16 | -- | 5.07 | 0.464 | -- | 23.63 | 391 | -- | -- |
| 264.83 | 0.763 | 12.2 | -0.868 | 2.35 | -- | -0.0564 | -- | -0.281 | 5.95 | -- | -- | -- | -- |
| 264.84 | 0.762 | 12.2 | -0.868 | 2.35 | -- | -- | -- | -0.281 | 5.95 | -- | -- | -- | -- |
| 145.86 | 0.562 | 12.1 | -0.105 | -- | -3.75 | -- | -- | 0.227 | -- | 23.58 | 393 | -- | -- |
| 108.68 | 0.486 | 12.1 | -- | 1.11 | -2.98 | -- | -- | 0.238 | 6.33 | 21.94 | 380 | -- | -- |
| 550.27 | 1.1 | 12.2 | -0.798 | -- | -- | -- | -- | -0.227 | -- | -- | -- | -- | -- |
| 284.69 | 0.789 | 12.2 | -- | 2.33 | -- | -- | -- | -0.184 | 5.97 | -- | -- | -- | -- |
| 146.13 | 0.563 | 12.1 | -- | -- | -3.77 | -- | -- | 0.244 | -- | 23.55 | 393 | -- | -- |
| 567.08 | 1.11 | 12.2 | -- | -- | -- | -- | -- | -0.138 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 104.23 | temperature | 20 | 270 | > th | dose dependent | rect. | 22 | 22 |
| 10 | 108.26 | temperature | 20 | 270 | > th | dose dependent | rect. | 12 | 23 |
| 13 | 110.37 | temperature | 20 | 270 | > th | dose dependent | rect. | 10 | 23 |
| 32 | 112.64 | temperature | 20 | 270 | > th | dose dependent | no | NA | NA |
| 33 | 112.95 | temperature | 20 | 270 | > th | dose dependent | rect. | 6 | 23 |
| 39 | 113.28 | temperature | 20 | 270 | > th | dose dependent | sin | 21 | NA |
| 58 | 114.84 | temperature | 25 | 270 | > th | dose dependent | rect. | 7 | 20 |
| 79 | 115.32 | temperature | 10 | 270 | > th | dose dependent | sin | 21 | NA |
| 104 | 115.99 | temperature | 10 | 720 | > th | dose dependent | rect. | 4 | 15 |
| 126 | 116.45 | temperature | 20 | 720 | > th | dose dependent | sin | 2 | NA |
| 223 | 119.36 | temperature | 10 | 720 | > th | dose dependent | sin | 0 | NA |
| 501 | 124.39 | temperature | 25 | 720 | > th | dose dependent | sin | 8 | NA |
| 603 | 125.41 | temperature | 25 | 1440 | > th | dose dependent | rect. | 16 | 1 |
| 651 | 125.86 | temperature | 25 | 720 | > th | dose dependent | rect. | 19 | 16 |
| 676 | 126.10 | temperature | 30 | 720 | < th | dose independent | rect. | 24 | 23 |
| 706 | 126.29 | temperature | 30 | 720 | > th | dose independent | rect. | 14 | 22 |
| 744 | 126.75 | temperature | 10 | 720 | > th | dose dependent | rect. | 6 | 18 |
| 814 | 127.32 | temperature | 25 | 1440 | > th | dose dependent | rect. | 15 | 3 |
| 824 | 127.40 | temperature | 30 | 720 | < th | dose independent | rect. | 14 | 23 |
| 872 | 127.86 | temperature | 30 | 720 | < th | dose independent | rect. | 9 | 14 |