Os02g0735200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Glutamine synthetase shoot isozyme (EC 6.3.1.2) (Glutamate--ammonia ligase) (Clone lambda-GS28).
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Os02g0735200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Glutamine synthetase shoot isozyme (EC 6.3.1.2) (Glutamate--ammonia ligase) (Clone lambda-GS28).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 59.75 | 0.363 | 13.8 | 1.13 | 1.87 | 0.637 | 0.134 | -5.1 | 0.44 | 8.27 | 25.9 | 4383 | -- | -- |
| 64.76 | 0.375 | 13.7 | 2.21 | 1.86 | 0.274 | 0.0227 | -- | 0.575 | 8.28 | 20.19 | 9281 | -- | -- |
| 59.81 | 0.36 | 13.8 | 1.13 | 1.87 | 0.637 | -- | -5.1 | 0.44 | 8.27 | 25.91 | 4376 | -- | -- |
| 64.48 | 0.374 | 13.7 | 2.15 | 1.87 | 0.345 | -- | -- | 0.561 | 8.29 | 14.27 | 9355 | -- | -- |
| 240.04 | 0.722 | 13.9 | 0.422 | -- | 1.14 | -- | -8.83 | 0.708 | -- | 29.8 | 5762 | -- | -- |
| 66.72 | 0.383 | 13.7 | 2.34 | 1.86 | -- | 0.116 | -- | 0.673 | 8.27 | -- | -- | -- | -- |
| 66.76 | 0.383 | 13.7 | 2.35 | 1.86 | -- | -- | -- | 0.673 | 8.27 | -- | -- | -- | -- |
| 254.09 | 0.742 | 13.7 | 2.54 | -- | -0.294 | -- | -- | 0.816 | -- | 34 | 32557 | -- | -- |
| 97.6 | 0.46 | 13.9 | -- | 1.89 | 1.72 | -- | -- | -0.0974 | 8.33 | 6.61 | 46803 | -- | -- |
| 258.3 | 0.751 | 13.7 | 2.36 | -- | -- | -- | -- | 0.693 | -- | -- | -- | -- | -- |
| 211.79 | 0.681 | 13.7 | -- | 1.87 | -- | -- | -- | 0.411 | 8.18 | -- | -- | -- | -- |
| 292.41 | 0.796 | 13.9 | -- | -- | 1.71 | -- | -- | -0.0791 | -- | 3.276 | 47520 | -- | -- |
| 405.04 | 0.939 | 13.8 | -- | -- | -- | -- | -- | 0.432 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 53.21 | humidity | 80 | 14400 | < th | dose dependent | rect. | 22 | 1 |
| 3 | 53.32 | humidity | 80 | 14400 | > th | dose independent | rect. | 2 | 2 |
| 4 | 53.34 | humidity | 80 | 14400 | < th | dose dependent | rect. | 21 | 7 |
| 22 | 53.74 | humidity | 80 | 14400 | < th | dose dependent | rect. | 3 | 1 |
| 26 | 53.78 | humidity | 80 | 14400 | < th | dose independent | rect. | 2 | 2 |
| 30 | 53.88 | humidity | 80 | 14400 | < th | dose dependent | rect. | 1 | 6 |
| 49 | 54.03 | humidity | 80 | 14400 | < th | dose independent | rect. | 23 | 6 |
| 61 | 54.13 | wind | 9 | 14400 | < th | dose independent | rect. | 13 | 1 |
| 62 | 54.13 | humidity | 80 | 14400 | < th | dose independent | rect. | 21 | 10 |
| 81 | 54.27 | humidity | 80 | 14400 | < th | dose independent | rect. | 23 | 2 |
| 82 | 54.27 | humidity | 80 | 14400 | > th | dose independent | rect. | 22 | 8 |
| 106 | 54.52 | wind | 9 | 14400 | > th | dose dependent | rect. | 13 | 2 |
| 107 | 54.54 | wind | 9 | 14400 | > th | dose independent | rect. | 13 | 2 |
| 135 | 54.79 | wind | 1 | 43200 | < th | dose dependent | rect. | 18 | 8 |
| 138 | 54.83 | wind | 1 | 43200 | < th | dose independent | rect. | 20 | 6 |
| 139 | 54.85 | wind | 9 | 14400 | > th | dose independent | rect. | 23 | 16 |
| 140 | 54.85 | wind | 9 | 14400 | < th | dose independent | rect. | 22 | 17 |
| 146 | 54.89 | wind | 9 | 14400 | < th | dose independent | rect. | 3 | 12 |
| 147 | 54.89 | wind | 9 | 14400 | > th | dose dependent | rect. | 23 | 16 |
| 149 | 54.90 | wind | 9 | 14400 | > th | dose independent | rect. | 3 | 12 |
| 152 | 54.92 | wind | 9 | 14400 | > th | dose dependent | rect. | 3 | 12 |
| 160 | 54.96 | wind | 1 | 43200 | < th | dose independent | rect. | 18 | 8 |
| 176 | 55.15 | wind | 1 | 43200 | < th | dose dependent | rect. | 20 | 6 |
| 181 | 55.20 | wind | 1 | 43200 | < th | dose dependent | rect. | 23 | 2 |
| 182 | 55.20 | wind | 9 | 14400 | > th | dose dependent | rect. | 10 | 5 |
| 203 | 55.39 | wind | 9 | 14400 | > th | dose independent | rect. | 9 | 6 |
| 210 | 55.46 | radiation | 40 | 43200 | < th | dose independent | rect. | 13 | 1 |
| 211 | 55.46 | wind | 9 | 14400 | < th | dose independent | rect. | 10 | 5 |
| 228 | 55.62 | radiation | 40 | 43200 | > th | dose independent | rect. | 11 | 2 |
| 239 | 55.68 | radiation | 40 | 43200 | > th | dose independent | rect. | 10 | 4 |
| 251 | 55.73 | wind | 1 | 43200 | > th | dose independent | rect. | 20 | 6 |
| 254 | 55.74 | wind | 1 | 43200 | > th | dose independent | rect. | 18 | 8 |
| 271 | 55.85 | radiation | 40 | 43200 | > th | dose independent | rect. | 10 | 22 |
| 317 | 55.93 | radiation | 40 | 43200 | > th | dose independent | sin | 21 | NA |
| 365 | 55.96 | radiation | 40 | 43200 | > th | dose independent | no | NA | NA |
| 557 | 56.02 | radiation | 30 | 43200 | > th | dose dependent | rect. | 12 | 1 |
| 593 | 56.04 | radiation | 30 | 43200 | > th | dose dependent | rect. | 11 | 3 |
| 836 | 56.27 | radiation | 40 | 43200 | < th | dose independent | sin | 19 | NA |
| 884 | 56.29 | wind | 1 | 43200 | < th | dose independent | rect. | 23 | 2 |
| 993 | 56.34 | radiation | 30 | 43200 | > th | dose dependent | sin | 19 | NA |