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Os04g0659100

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Glutamine synthetase shoot isozyme, chloroplast precursor (EC 6.3.1.2) (Glutamate--ammonia ligase) (Clone lambda-GS31).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 15.6 (0.0186) R2 : 0.548
β1 : -0.831 (0.0681) R2dD : 0.153 R2D : 0.0527
β2 : 0.869 (0.0478) R2dC : 0.328 R2C : 0.263
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.473 (0.0397) R2dN8 : 0.188 R2N8 : 0.0766
σ : 0.35
deviance : 55.79
__
_____
C
peak time of C : 4.49
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
46.31 0.32 15.6 -0.803 0.837 0.449 1.41 0.174 -0.461 6.91 0.0002842 30 -- --
46.45 0.317 15.6 -0.793 0.837 0.443 1.31 -- -0.458 6.83 0.01 32 -- --
50.48 0.333 15.6 -0.783 0.9 0.427 -- -0.357 -0.435 6.67 0.008263 32 -- --
50.91 0.332 15.6 -0.78 0.837 0.45 -- -- -0.467 6.84 0.009145 32 -- --
53.42 0.34 15.5 -0.748 -- 0.902 -- 1.1 -0.391 -- 5.302 598 -- --
52.3 0.339 15.6 -0.824 0.863 -- 1.19 -- -0.466 4.74 -- -- -- --
55.79 0.35 15.6 -0.831 0.869 -- -- -- -0.473 4.49 -- -- -- --
54.57 0.344 15.6 -0.801 -- 0.973 -- -- -0.399 -- 13.37 554 -- --
67.13 0.382 15.6 -- 0.837 0.435 -- -- -0.425 6.69 1.138e-05 34 -- --
96.14 0.458 15.6 -0.797 -- -- -- -- -0.45 -- -- -- -- --
73.97 0.402 15.6 -- 0.853 -- -- -- -0.38 4.52 -- -- -- --
70.41 0.391 15.5 -- -- 1.05 -- -- -0.286 -- 26.49 520 -- --
112.89 0.496 15.6 -- -- -- -- -- -0.361 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 39.29 temperature 10.0 270 > th dose dependent rect. 18 8
6 40.41 wind 9.0 270 < th dose independent rect. 3 14
7 40.53 temperature 15.0 270 > th dose independent rect. 3 14
8 40.58 atmosphere 1015.0 270 < th dose independent rect. 21 15
10 40.65 atmosphere 1015.0 270 < th dose independent rect. 17 9
11 40.68 precipitation 0.1 270 < th dose independent rect. 17 10
12 40.68 precipitation 0.1 270 < th dose dependent rect. 17 10
13 40.69 temperature 10.0 270 > th dose independent rect. 17 10
14 40.69 radiation 20.0 270 < th dose independent rect. 17 10
18 40.69 atmosphere 1015.0 270 < th dose independent rect. 3 14
19 40.72 wind 9.0 270 < th dose independent rect. 17 10
21 40.73 radiation 40.0 270 < th dose dependent rect. 17 10
23 40.78 wind 1.0 270 > th dose independent rect. 17 10
25 40.82 humidity 50.0 270 > th dose independent rect. 17 10
37 41.00 atmosphere 995.0 270 > th dose independent rect. 3 14
39 41.01 wind 9.0 270 < th dose independent rect. 13 18
41 41.03 atmosphere 1015.0 270 < th dose independent rect. 8 17
42 41.05 atmosphere 995.0 270 > th dose independent rect. 13 18
45 41.09 precipitation 0.1 270 < th dose independent rect. 7 6
47 41.09 precipitation 0.1 270 < th dose dependent rect. 7 6
48 41.10 temperature 10.0 270 > th dose independent rect. 7 6
49 41.10 atmosphere 995.0 270 > th dose independent rect. 7 6
50 41.10 atmosphere 1015.0 270 < th dose independent rect. 7 6
51 41.10 precipitation 0.1 270 < th dose independent rect. 3 14
52 41.10 temperature 10.0 270 > th dose independent rect. 13 18
53 41.10 precipitation 0.1 270 < th dose dependent rect. 3 14
66 41.17 wind 9.0 270 < th dose independent rect. 7 6
68 41.20 radiation 1.0 270 > th dose independent rect. 7 6
73 41.26 wind 1.0 270 > th dose independent rect. 7 6
101 41.56 wind 1.0 270 > th dose independent rect. 8 17
103 41.58 wind 9.0 270 < th dose independent rect. 12 9
106 41.61 humidity 50.0 270 > th dose independent rect. 7 6
108 41.64 radiation 40.0 270 < th dose independent rect. 8 17
117 41.70 atmosphere 995.0 270 > th dose independent rect. 17 10
118 41.72 wind 9.0 10 < th dose independent rect. 14 18
119 41.73 temperature 10.0 270 > th dose independent rect. 12 9
120 41.73 temperature 10.0 270 > th dose independent rect. 21 15
121 41.73 atmosphere 995.0 270 > th dose independent rect. 21 15
122 41.74 precipitation 0.1 270 < th dose independent rect. 21 15
123 41.74 precipitation 0.1 270 < th dose dependent rect. 21 15
132 41.78 radiation 40.0 10 < th dose independent rect. 14 18
138 41.81 wind 9.0 270 < th dose independent rect. 21 15
143 41.83 temperature 10.0 10 > th dose independent rect. 8 6
145 41.83 atmosphere 995.0 10 > th dose independent rect. 8 6
146 41.83 atmosphere 1015.0 10 < th dose independent rect. 8 6
147 41.83 radiation 1.0 10 > th dose independent rect. 8 6
148 41.83 precipitation 0.1 10 < th dose independent rect. 8 6
151 41.83 temperature 10.0 10 > th dose independent rect. 14 18
152 41.83 precipitation 0.1 10 < th dose dependent rect. 8 6
155 41.84 atmosphere 995.0 10 > th dose independent rect. 14 18
157 41.85 wind 9.0 10 < th dose independent rect. 8 6
169 41.88 temperature 10.0 1440 > th dose independent rect. 9 6
172 41.88 temperature 10.0 1440 > th dose independent rect. 15 18
187 41.92 precipitation 0.1 270 < th dose independent rect. 13 18
188 41.92 precipitation 0.1 270 < th dose dependent rect. 13 18
201 41.97 radiation 40.0 270 < th dose dependent rect. 8 17
207 41.99 atmosphere 1015.0 10 < th dose independent rect. 22 16
217 42.02 atmosphere 995.0 270 > th dose independent rect. 12 9
285 42.23 wind 1.0 30 > th dose independent rect. 8 6
287 42.24 precipitation 0.1 270 < th dose independent rect. 12 9
289 42.24 precipitation 0.1 270 < th dose dependent rect. 12 9
294 42.26 atmosphere 1015.0 270 < th dose independent rect. 12 8
302 42.28 humidity 50.0 270 > th dose independent rect. 21 15
304 42.29 temperature 30.0 270 < th dose independent rect. 18 9
322 42.32 precipitation 0.1 270 < th dose independent rect. 8 17
325 42.32 precipitation 0.1 270 < th dose dependent rect. 8 17
328 42.33 humidity 70.0 270 > th dose independent rect. 1 7
333 42.34 wind 9.0 270 < th dose independent rect. 1 7
334 42.34 temperature 10.0 270 > th dose independent rect. 1 7
336 42.34 temperature 30.0 270 < th dose independent rect. 1 7
337 42.34 humidity 50.0 270 > th dose independent rect. 1 7
339 42.34 atmosphere 995.0 270 > th dose independent rect. 1 7
340 42.34 atmosphere 1015.0 270 < th dose independent rect. 1 7
342 42.34 temperature 10.0 270 > th dose independent rect. 8 17
350 42.36 radiation 40.0 270 < th dose independent rect. 1 7
360 42.40 radiation 20.0 270 < th dose independent rect. 1 6
394 42.45 precipitation 0.1 30 < th dose independent rect. 14 18
395 42.45 precipitation 0.1 30 < th dose dependent rect. 14 18
399 42.47 precipitation 0.1 270 < th dose independent rect. 1 7
406 42.47 precipitation 0.1 270 < th dose dependent rect. 1 7
432 42.56 radiation 10.0 270 < th dose dependent rect. 8 18
448 42.60 radiation 40.0 270 < th dose dependent rect. 1 7
453 42.63 radiation 40.0 270 < th dose independent rect. 14 17
468 42.68 radiation 40.0 270 < th dose independent rect. 7 7
476 42.70 humidity 50.0 270 > th dose dependent rect. 1 7
492 42.74 wind 9.0 270 < th dose independent rect. 8 17
523 42.82 humidity 90.0 90 < th dose independent rect. 8 6
561 42.85 radiation 1.0 270 < th dose independent rect. 8 18
567 42.86 wind 1.0 270 > th dose independent rect. 20 16
574 42.87 wind 1.0 270 > th dose independent rect. 12 9
585 42.89 atmosphere 1015.0 10 < th dose independent rect. 20 18
605 42.91 temperature 15.0 270 > th dose independent rect. 9 2
633 42.93 radiation 1.0 270 > th dose independent rect. 9 2
642 42.94 wind 1.0 270 > th dose independent rect. 9 2
651 42.94 temperature 15.0 10 > th dose dependent rect. 21 6
741 43.04 precipitation 0.1 270 < th dose independent rect. 18 19
742 43.04 precipitation 0.1 270 < th dose dependent rect. 18 19
747 43.05 atmosphere 995.0 270 > th dose dependent rect. 12 8
757 43.06 wind 9.0 270 < th dose dependent rect. 1 7
800 43.10 temperature 20.0 10 > th dose independent rect. 8 8
825 43.13 temperature 10.0 10 > th dose independent rect. 8 8
827 43.13 atmosphere 1015.0 10 < th dose independent rect. 8 8
829 43.13 precipitation 0.1 10 < th dose independent rect. 8 8
837 43.13 wind 9.0 10 < th dose independent rect. 16 16
838 43.13 temperature 10.0 10 > th dose independent rect. 16 16
841 43.13 radiation 40.0 10 < th dose independent rect. 16 16
846 43.13 precipitation 0.1 10 < th dose dependent rect. 8 8
876 43.19 wind 9.0 10 < th dose independent rect. 8 8
888 43.22 temperature 10.0 1440 > th dose independent rect. 9 8
891 43.22 temperature 10.0 1440 > th dose independent rect. 17 16
895 43.22 humidity 50.0 270 > th dose independent rect. 7 18
899 43.22 atmosphere 1015.0 270 < th dose dependent rect. 1 6
901 43.23 temperature 30.0 270 < th dose independent rect. 7 6
911 43.24 atmosphere 995.0 10 > th dose independent rect. 16 16
918 43.25 humidity 90.0 270 < th dose independent rect. 9 3
988 43.32 radiation 10.0 30 < th dose dependent sin 12 NA
992 43.33 atmosphere 995.0 270 > th dose independent rect. 13 5