BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0712200 Os03g0712200|AK073205
(523 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os03g0712200 Zinc finger, RanBP2-type domain containing pro... 981 0.0
Os03g0708900 Zinc finger, RanBP2-type domain containing pro... 243 3e-64
Os07g0404300 Zinc finger, RanBP2-type domain containing pro... 213 2e-55
Os01g0815700 Zinc finger, RanBP2-type domain containing pro... 128 8e-30
Os01g0203300 Conserved hypothetical protein 72 1e-12
>Os03g0712200 Zinc finger, RanBP2-type domain containing protein
Length = 523
Score = 981 bits (2535), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 482/523 (92%), Positives = 482/523 (92%)
Query: 1 MRHRVGPXXXXXXXLRRFSHXXXXXXXXXXXXXXXSEFDGREPGRQPPSPETREEPKGGE 60
MRHRVGP LRRFSH SEFDGREPGRQPPSPETREEPKGGE
Sbjct: 1 MRHRVGPAAAAAAALRRFSHLRPPAPPDPRLAFLRSEFDGREPGRQPPSPETREEPKGGE 60
Query: 61 RARSPVAVDIAHPWPEWVALMELLLQRGHLDASVFAGGAAGSPSKDSNVIRTACLRFGRE 120
RARSPVAVDIAHPWPEWVALMELLLQRGHLDASVFAGGAAGSPSKDSNVIRTACLRFGRE
Sbjct: 61 RARSPVAVDIAHPWPEWVALMELLLQRGHLDASVFAGGAAGSPSKDSNVIRTACLRFGRE 120
Query: 121 RPELIRHLSRWDIQVALRYGCPSIDRKVVNSGKRLRAHVGLDEGEVCSQCNLRGGCERAY 180
RPELIRHLSRWDIQVALRYGCPSIDRKVVNSGKRLRAHVGLDEGEVCSQCNLRGGCERAY
Sbjct: 121 RPELIRHLSRWDIQVALRYGCPSIDRKVVNSGKRLRAHVGLDEGEVCSQCNLRGGCERAY 180
Query: 181 VKARKEEIGRTVDVMRILLTYGLDTVTGNVENRACLNKTVKESIKSLLNEIVGFDSMGPG 240
VKARKEEIGRTVDVMRILLTYGLDTVTGNVENRACLNKTVKESIKSLLNEIVGFDSMGPG
Sbjct: 181 VKARKEEIGRTVDVMRILLTYGLDTVTGNVENRACLNKTVKESIKSLLNEIVGFDSMGPG 240
Query: 241 SSTEKPTHRMPKGQSSIPMKQGDWNCPKCNFLNFAKNIKCLRCNGEFEERYQLLHENQEH 300
SSTEKPTHRMPKGQSSIPMKQGDWNCPKCNFLNFAKNIKCLRCNGEFEERYQLLHENQEH
Sbjct: 241 SSTEKPTHRMPKGQSSIPMKQGDWNCPKCNFLNFAKNIKCLRCNGEFEERYQLLHENQEH 300
Query: 301 LPLKKGDWICKRCNFLNFAKNTRCLQCHEKPTNRQLNPGEWECVSCNYLNFKRNAFCLKC 360
LPLKKGDWICKRCNFLNFAKNTRCLQCHEKPTNRQLNPGEWECVSCNYLNFKRNAFCLKC
Sbjct: 301 LPLKKGDWICKRCNFLNFAKNTRCLQCHEKPTNRQLNPGEWECVSCNYLNFKRNAFCLKC 360
Query: 361 GWKRPKSLNNQDSIESQRDLDDNKHSAISFIQDGIQSRRQILQNKAPLXXXXXXXXXXXX 420
GWKRPKSLNNQDSIESQRDLDDNKHSAISFIQDGIQSRRQILQNKAPL
Sbjct: 361 GWKRPKSLNNQDSIESQRDLDDNKHSAISFIQDGIQSRRQILQNKAPLSDEDSDFWSSEE 420
Query: 421 XGAYHSDKNIPPIKKDYKFLESFPIIGGRTAMSQDPLEREKWKDEMSRRNKGLLTEVSEE 480
GAYHSDKNIPPIKKDYKFLESFPIIGGRTAMSQDPLEREKWKDEMSRRNKGLLTEVSEE
Sbjct: 421 EGAYHSDKNIPPIKKDYKFLESFPIIGGRTAMSQDPLEREKWKDEMSRRNKGLLTEVSEE 480
Query: 481 SNRPSCPVRIPRSIEQIESGXXXXXXISSWFSGGTSNINMKKA 523
SNRPSCPVRIPRSIEQIESG ISSWFSGGTSNINMKKA
Sbjct: 481 SNRPSCPVRIPRSIEQIESGDDDDDDISSWFSGGTSNINMKKA 523
>Os03g0708900 Zinc finger, RanBP2-type domain containing protein
Length = 504
Score = 243 bits (619), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 133/340 (39%), Positives = 180/340 (52%), Gaps = 53/340 (15%)
Query: 74 WPEWVALMELLLQRGHLDASVFAG--------------------------GAAGSPSKDS 107
WPEW +E L +G+ + A A PSKD
Sbjct: 60 WPEWGDFLEKLRAKGYFEQPTLASRADAAEGEVAATAAAAAAAAGEDPGASADNYPSKDL 119
Query: 108 NVIRTACLRFGRERPELIRHLSRWDIQVALRYGCPSIDRKVVNSGKRLRAHVGLDEGEVC 167
N ++ ACL+FGRER +L+ L + DI+ + GCP+I RK VNS KRLR + +DEG+ C
Sbjct: 120 NRLKNACLKFGRERFDLLSVLPKQDIRAIVECGCPNIFRKPVNSAKRLREFLQIDEGDAC 179
Query: 168 SQCNLRGGCERAYVKARKEEIGRTVDVMRILLTYGLDTVTGNVENRACLNKTVKESIKSL 227
S C LRG C++AYV E+ RTVDVMRILL Y +D + + EN +N V+ES + L
Sbjct: 180 SACKLRGSCDKAYVIPNAEDEARTVDVMRILLNYAIDPTSLSGENS--VNGGVQESARKL 237
Query: 228 LNEIVGFDSMGPGSSTEKP-------THRMPKG-------------QSSIPMKQGDWNCP 267
L+E+ S KP T KG + MK+GDW CP
Sbjct: 238 LSELTMLSDTTIDPSIPKPVFQTSSKTKTFDKGIAKPKFSAGKGRETTETEMKKGDWLCP 297
Query: 268 KCNFLNFAKNIKCLRCNGEFEERYQLLHENQEHLPLKKGDWICKRCNFLNFAKNTRCLQC 327
CNFLNFA+N CL C + ++ + +K GDWIC +C+F+NFA+N C +C
Sbjct: 298 NCNFLNFARNRHCLECKADGPKKIETATTE-----MKTGDWICPQCHFMNFARNKMCFKC 352
Query: 328 HEKPTNRQLNPGEWECVSCNYLNFKRNAFCLKCGWKRPKS 367
E RQL PGEWEC SC+++NF+RN CLKC + P++
Sbjct: 353 EESRPKRQLIPGEWECPSCSFVNFRRNKVCLKCKHEGPEN 392
>Os07g0404300 Zinc finger, RanBP2-type domain containing protein
Length = 647
Score = 213 bits (543), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 120/317 (37%), Positives = 171/317 (53%), Gaps = 48/317 (15%)
Query: 68 VDIAHPWPEWVALMELLLQRGHLDASVFAGG-----AAGSP--------------SKDSN 108
V++ HPWPEW+ LM+ L Q+ + D G AA P S+D
Sbjct: 11 VELVHPWPEWIELMDRLAQQKYFDLGGTGGADEGCVAAAVPMDLAEVTQETGFDFSRDWT 70
Query: 109 VIRTACLRFGRERPELIRHLSRWDIQVALRYGCPSIDRKVVNSGKRLRAHVGLDEGEVCS 168
++ AC+ FGR+R ++++ L R D+QV + +GCPS+D KVV S K +R V LDEG+VCS
Sbjct: 71 TVKNACMNFGRDRFDIVKSLPRKDLQVLVGHGCPSMDPKVVFSAKLIRKLVHLDEGDVCS 130
Query: 169 QCNLRGGCERAYVKARKEEIGRTVDVMRILLTYGLDTVTGNVENRACLNKTVKESIKSLL 228
CNLR C R Y+ RKE+ RT+DVMRILL YG D V VEN+ L +S+K+++
Sbjct: 131 SCNLRNLCSRGYILTRKEDEARTLDVMRILLFYGFDHVKETVENKPLLKL---KSVKTVV 187
Query: 229 NEIVGFDSMGPGSSTEKPTHRMPKGQSSIPMKQGDWNCPKCNFLNFAKNIKCLRCNGEFE 288
+++ H + K S++P+ N +
Sbjct: 188 RKLI---------------HDIAK-LSAVPIDP--------NLPPPIIRKPPPKVKQPPP 223
Query: 289 ERYQLLHENQEHLPLKKGDWICKRCNFLNFAKNTRCLQCHEKPTNRQLNPGEWECVSCNY 348
+ + ++ + +KKGDW+C +C+F+NFAKNT CLQC K RQL PGEWEC CN+
Sbjct: 224 PPKKRV--GRDDVEMKKGDWLCPKCDFMNFAKNTICLQCDAKRPKRQLLPGEWECPRCNF 281
Query: 349 LNFKRNAFCLKCGWKRP 365
LN++RN C C RP
Sbjct: 282 LNYRRNMSCFHCEHNRP 298
>Os01g0815700 Zinc finger, RanBP2-type domain containing protein
Length = 950
Score = 128 bits (322), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 88/308 (28%), Positives = 137/308 (44%), Gaps = 79/308 (25%)
Query: 73 PWPEWVALMELLLQRGHLDASVFAGGAAGSP------------SKDSNVIRTACLRFGRE 120
P+PEW L++ L G+ G A SP S D+ ++ L F R+
Sbjct: 76 PFPEWSRLVDRLSAAGY-------GARAPSPADELDLDPECGLSSDAEAAVSSFLAFARD 128
Query: 121 RPELIRHLSRWDIQVALRYGCPSIDRKVVNSGKRLRAHVGLDEGEVCSQCNLRGGCERAY 180
RP+L+R L R D++V + P++ + S RLR ++ EG +Q ERA
Sbjct: 129 RPDLLRSLPRKDVEVLVANAAPALFKDGEASELRLRQYLA-GEGSDVTQS------ERA- 180
Query: 181 VKARKEEIGRTVDVMRILLTYGLDTVTGNVENRACLNKTVKESIKSLLNEIVGFDSMGPG 240
T+D++R LL+Y + ++++ + V+ ++L E V F
Sbjct: 181 ---------ETIDIVRYLLSYAYGSPVSYLKDKELTDSAVR----NILAEFVSFSGFPQT 227
Query: 241 SSTEKPTHRMPKGQSSIPMKQGDWNCPKCNFLNFAKNIKCLRCNGEFEERYQLLHENQEH 300
SS + T R +N R G+ +
Sbjct: 228 SSYAESTAR--------------------------QNTLGSRPPGQ-------------N 248
Query: 301 LPLKKGDWICKRCNFLNFAKNTRCLQCHEKPTNRQLNPGEWECVSCNYLNFKRNAFCLKC 360
+ +K+GDWIC RC+F+NFA+N RCL+C+E + L GEWEC C Y N+ RN CL+C
Sbjct: 249 IEMKRGDWICTRCSFMNFARNARCLECNEHRPKKMLTGGEWECPQCVYYNYGRNMSCLRC 308
Query: 361 GWKRPKSL 368
KRP ++
Sbjct: 309 SCKRPGTI 316
>Os01g0203300 Conserved hypothetical protein
Length = 221
Score = 72.0 bits (175), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 38/121 (31%), Positives = 65/121 (53%), Gaps = 4/121 (3%)
Query: 108 NVIRTACLRFGRERPELIRHLSRWDIQVALRYGCPSIDRKVVNSGKRLRAHVGLDEGEVC 167
+V++ A RFG + + + LS D++ +GCPS++R+ V + KRLRA + E ++C
Sbjct: 97 DVVKGAAERFGHDHQVVAKWLSGSDLKKVALFGCPSVERRTVFASKRLRAFFKIQEAKIC 156
Query: 168 SQCNLRGGCERAYVKARKEEIGRTVDVMRILLTYGLDTVTGNV----ENRACLNKTVKES 223
C +R C+ + + + D MRIL + LDT + E +A + K VK++
Sbjct: 157 GSCKMRNSCQFVNQEVSRHDKVILSDTMRILTLFVLDTCPQQLKVTPELKASICKLVKDT 216
Query: 224 I 224
I
Sbjct: 217 I 217
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.318 0.135 0.423
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 18,359,868
Number of extensions: 787785
Number of successful extensions: 1994
Number of sequences better than 1.0e-10: 5
Number of HSP's gapped: 1972
Number of HSP's successfully gapped: 7
Length of query: 523
Length of database: 17,035,801
Length adjustment: 105
Effective length of query: 418
Effective length of database: 11,553,331
Effective search space: 4829292358
Effective search space used: 4829292358
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 158 (65.5 bits)