Os07g0404300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Zinc finger, RanBP2-type domain containing protein.
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Os07g0404300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Zinc finger, RanBP2-type domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 43.05 | 0.308 | 10 | 0.167 | 0.277 | 0.615 | 0.484 | 0.316 | -0.372 | 11.5 | 25.7 | 10 | -- | -- |
| 43.03 | 0.308 | 10 | 0.138 | 0.282 | 0.642 | 0.526 | -- | -0.37 | 11.7 | 26.19 | 11 | -- | -- |
| 43.9 | 0.309 | 10 | 0.236 | 0.272 | 0.612 | -- | 0.861 | -0.362 | 10.9 | 25.6 | 9 | -- | -- |
| 44.13 | 0.309 | 10 | 0.149 | 0.268 | 0.691 | -- | -- | -0.376 | 11 | 25.97 | 10 | -- | -- |
| 47.88 | 0.324 | 10 | 0.175 | -- | 0.803 | -- | 0.522 | -0.378 | -- | 25.6 | 9 | -- | -- |
| 49.05 | 0.328 | 10 | 0.221 | 0.446 | -- | 0.718 | -- | -0.349 | 13 | -- | -- | -- | -- |
| 51.19 | 0.335 | 10 | 0.246 | 0.444 | -- | -- | -- | -0.346 | 12.8 | -- | -- | -- | -- |
| 47.98 | 0.324 | 10 | 0.124 | -- | 0.842 | -- | -- | -0.391 | -- | 25.6 | 9 | -- | -- |
| 44.68 | 0.311 | 10 | -- | 0.259 | 0.727 | -- | -- | -0.398 | 10.7 | 25.75 | 11 | -- | -- |
| 63.52 | 0.372 | 10 | 0.23 | -- | -- | -- | -- | -0.354 | -- | -- | -- | -- | -- |
| 52.79 | 0.34 | 10 | -- | 0.44 | -- | -- | -- | -0.373 | 12.8 | -- | -- | -- | -- |
| 48.37 | 0.325 | 10 | -- | -- | 0.861 | -- | -- | -0.405 | -- | 25.6 | 9 | -- | -- |
| 64.91 | 0.376 | 10 | -- | -- | -- | -- | -- | -0.379 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 40.84 | wind | 1 | 14400 | < th | dose dependent | rect. | 2 | 1 |
| 2 | 41.05 | temperature | 25 | 30 | > th | dose dependent | rect. | 19 | 21 |
| 3 | 41.09 | temperature | 25 | 270 | > th | dose dependent | sin | 6 | NA |
| 5 | 41.13 | temperature | 25 | 90 | > th | dose dependent | sin | 3 | NA |
| 10 | 41.30 | temperature | 25 | 90 | > th | dose dependent | rect. | 1 | 15 |
| 11 | 41.31 | temperature | 25 | 90 | > th | dose dependent | rect. | 3 | 13 |
| 17 | 41.36 | temperature | 25 | 90 | > th | dose dependent | rect. | 23 | 17 |
| 24 | 41.40 | temperature | 25 | 10 | > th | dose dependent | rect. | 1 | 15 |
| 29 | 41.42 | temperature | 25 | 10 | > th | dose dependent | rect. | 4 | 12 |
| 31 | 41.42 | temperature | 25 | 10 | > th | dose dependent | rect. | 23 | 17 |
| 39 | 41.46 | temperature | 25 | 270 | > th | dose dependent | rect. | 19 | 19 |
| 40 | 41.47 | wind | 1 | 14400 | < th | dose independent | rect. | 2 | 1 |
| 53 | 41.51 | temperature | 25 | 10 | > th | dose dependent | rect. | 21 | 19 |
| 54 | 41.52 | wind | 1 | 14400 | > th | dose independent | rect. | 2 | 1 |
| 150 | 42.11 | temperature | 30 | 270 | < th | dose independent | rect. | 24 | 19 |
| 151 | 42.11 | temperature | 30 | 14400 | > th | dose dependent | rect. | 8 | 1 |
| 248 | 42.64 | temperature | 30 | 270 | < th | dose independent | sin | 6 | NA |
| 249 | 42.65 | temperature | 30 | 14400 | > th | dose independent | rect. | 8 | 1 |
| 287 | 42.81 | atmosphere | 1000 | 30 | > th | dose independent | sin | 23 | NA |
| 288 | 42.81 | wind | 1 | 14400 | < th | dose dependent | rect. | 2 | 6 |
| 295 | 42.84 | temperature | 30 | 90 | > th | dose independent | rect. | 8 | 7 |
| 342 | 42.96 | temperature | 30 | 720 | > th | dose independent | rect. | 8 | 3 |
| 359 | 42.97 | temperature | 30 | 720 | > th | dose independent | sin | 7 | NA |
| 362 | 42.97 | temperature | 30 | 14400 | < th | dose independent | rect. | 3 | 6 |
| 363 | 42.97 | temperature | 30 | 14400 | < th | dose independent | rect. | 1 | 8 |
| 390 | 43.02 | temperature | 30 | 14400 | < th | dose independent | rect. | 19 | 14 |
| 396 | 43.04 | temperature | 30 | 14400 | < th | dose independent | rect. | 7 | 2 |
| 416 | 43.05 | temperature | 30 | 14400 | < th | dose independent | rect. | 21 | 12 |
| 422 | 43.07 | temperature | 30 | 14400 | < th | dose independent | rect. | 23 | 10 |
| 434 | 43.09 | atmosphere | 1000 | 10 | < th | dose independent | sin | 23 | NA |
| 435 | 43.09 | wind | 1 | 14400 | < th | dose independent | rect. | 2 | 6 |
| 442 | 43.11 | temperature | 30 | 90 | > th | dose independent | sin | 3 | NA |
| 471 | 43.15 | temperature | 20 | 720 | > th | dose dependent | rect. | 16 | 5 |
| 498 | 43.23 | temperature | 30 | 720 | < th | dose independent | rect. | 3 | 8 |
| 503 | 43.23 | temperature | 25 | 10 | > th | dose dependent | rect. | 23 | 23 |
| 504 | 43.24 | temperature | 30 | 10 | > th | dose independent | rect. | 9 | 7 |
| 528 | 43.25 | temperature | 25 | 10 | > th | dose dependent | rect. | 1 | 23 |
| 530 | 43.26 | radiation | 40 | 270 | < th | dose independent | rect. | 9 | 10 |
| 546 | 43.28 | temperature | 25 | 10 | > th | dose dependent | rect. | 4 | 20 |
| 548 | 43.28 | temperature | 25 | 10 | > th | dose dependent | rect. | 7 | 23 |
| 565 | 43.29 | temperature | 25 | 10 | > th | dose dependent | no | NA | NA |
| 570 | 43.30 | atmosphere | 1000 | 270 | > th | dose independent | sin | 1 | NA |
| 592 | 43.32 | atmosphere | 1000 | 10 | > th | dose independent | rect. | 24 | 23 |
| 608 | 43.33 | temperature | 25 | 10 | > th | dose dependent | rect. | 7 | 17 |
| 696 | 43.40 | atmosphere | 1000 | 10 | < th | dose independent | rect. | 8 | 12 |
| 803 | 43.47 | temperature | 30 | 270 | < th | dose independent | rect. | 9 | 10 |
| 893 | 43.57 | atmosphere | 1000 | 10 | < th | dose independent | rect. | 4 | 16 |
| 945 | 43.63 | wind | 1 | 14400 | > th | dose independent | rect. | 2 | 6 |
| 997 | 43.67 | temperature | 25 | 720 | > th | dose independent | rect. | 15 | 7 |