BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os07g0404300 Os07g0404300|AK101785
(647 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G55040.1 | chr1:20534895-20538901 FORWARD LENGTH=850 419 e-117
AT1G70650.1 | chr1:26638158-26640126 FORWARD LENGTH=467 193 3e-49
AT1G48570.1 | chr1:17955455-17957661 REVERSE LENGTH=456 164 1e-40
AT5G17790.1 | chr5:5869810-5872671 REVERSE LENGTH=759 140 2e-33
AT1G53460.1 | chr1:19954558-19956509 REVERSE LENGTH=315 57 3e-08
>AT1G55040.1 | chr1:20534895-20538901 FORWARD LENGTH=850
Length = 849
Score = 419 bits (1078), Expect = e-117, Method: Compositional matrix adjust.
Identities = 251/500 (50%), Positives = 313/500 (62%), Gaps = 35/500 (7%)
Query: 15 HPWPEWIELMDRLAQQKYFDLGGTGGADEGCVAAAVPMDLAEVT----QETGFDFSRDWT 70
HPWPEW+ELM+RL +Q YFD D+ + ++ +D++ V + G +D+
Sbjct: 147 HPWPEWMELMERLVKQNYFDHRRERDDDD--MVNSLGIDVSSVGLGEDENVGVALFQDFR 204
Query: 71 TVKNACMNFGRDRFDIVKSLPRKDLQVLVGHGCPSMDPKVVFSAKLIRKLVHLDEGDVCS 130
V+NAC NFG+DRFDI++SL R D+Q+LVGHGCP+ D KVVFS KL+RK VHLDEGDVCS
Sbjct: 205 AVQNACSNFGKDRFDILRSLSRNDIQILVGHGCPATDRKVVFSGKLLRKRVHLDEGDVCS 264
Query: 131 SCNLRNLCSRGYILTRKEDEARTLDVMRILLFYGFDHVKETVENKPLLKLKSVKTVVRKL 190
SC+LRN C + ++LT KEDEART+D+MRIL YGFD + TV NK LLK KSVK+VVRKL
Sbjct: 265 SCSLRNSCEKAFLLTNKEDEARTIDLMRILFTYGFDPLNGTVANKSLLKKKSVKSVVRKL 324
Query: 191 IHDIAKLSAVPIDPNLXXXXXXXXXXXXXXXXXXXXXXXGRDDVEMKKGDWLCPKCDFMN 250
+H+I KLSAVPIDPNL GRDDVEMKKGDWLCPKCDFMN
Sbjct: 325 LHEIVKLSAVPIDPNLTPPVIKRAPPKVKQPPPTPKRRVGRDDVEMKKGDWLCPKCDFMN 384
Query: 251 FAKNTICLQCDAKRPKRQLLPGEWECPRCNFLNYRRNMSCFHCEHNRPPDEYTNSQMEAN 310
FAKNTICLQCDAKRPKRQLLPGEWECP CNFLNYRRNM+CFHC+ RP D ++ +
Sbjct: 385 FAKNTICLQCDAKRPKRQLLPGEWECPECNFLNYRRNMACFHCDCKRPADAILENKPQET 444
Query: 311 QSVPRKRLERPAHKSEVCNAWNFDFDDNESDGADVAAFEFADSSKARNSLSVDNTSSRGG 370
+ +R + +V NAWNFDFDD+ESDGA+VAAFE+ADSSK +L R G
Sbjct: 445 YRFTEAQTDRVVKRDDVSNAWNFDFDDDESDGAEVAAFEYADSSKKNENL------LREG 498
Query: 371 SKFSEDNEFG-INETWREGTERRFSERERVGXXXXXXXXXXXXSYELDLSK------GGQ 423
+ E+ EFG + RE +E S R VG SYE+D SK G
Sbjct: 499 LRDPEE-EFGNLPPGARESSEFGRSRRPGVG-FDDFDDEDDIDSYEIDESKERDVPVEGA 556
Query: 424 TDGMSRMSYLDFEDACDS-----ADLNGRAKIRNS--KHG------EEEDIIG-SPEDEE 469
+ + + E +S A G + NS KHG +D +G S +DE
Sbjct: 557 RSSFASDEFSEDEKFPESKSGFNAHRGGSSNFHNSGKKHGNSKGGFSRDDELGFSSDDEV 616
Query: 470 FDHPSLRSSHLAASWRKPVS 489
+P +SSH+A++ R P S
Sbjct: 617 SANPRWKSSHVASTQRGPPS 636
>AT1G70650.1 | chr1:26638158-26640126 FORWARD LENGTH=467
Length = 466
Score = 193 bits (490), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 119/364 (32%), Positives = 166/364 (45%), Gaps = 87/364 (23%)
Query: 15 HPWPEWIELMDRLAQQKYFDLGGTGGADEGCVAAAVPMDLAEVTQETGFDFSRDWTTVKN 74
HPWPEW++LM LA++ YF+ + +P+ S++ ++
Sbjct: 44 HPWPEWLDLMGMLAKKGYFE------------ESLIPLM-----------SSKESNHIRT 80
Query: 75 ACMNFGRDRFDIVKSLPRKDLQVLVGHGCPSMDPKVVFSAKLIRKLVHLDEGDVCSSCNL 134
AC+NF R RF +V++L +KD++V+ G GCPS D KVV S K +R V +DEG+VC SCNL
Sbjct: 81 ACLNFARHRFTLVRNLSKKDIKVIAGCGCPSTDRKVVNSGKRLRAYVGIDEGNVCGSCNL 140
Query: 135 RNLCSRGYILTRKEDEARTLDVMRILLFYGFDHVKETVENKPLLKLKSVKTVVRKLIHDI 194
R C R Y R ++ ART+DVMR+LL YG D + TVEN+ + K V+ VRKL+ +
Sbjct: 141 RGKCERAYAQARDDEGARTIDVMRLLLTYGLDSISPTVENRAC-QTKLVEDSVRKLLRES 199
Query: 195 AKLSAVPIDPNLXXXXXXXXXXXXXXXXXXXXXXXGRDDVEMKKGDWLCPKCDFMNFAKN 254
S + D + GDW C +C F+NFAKN
Sbjct: 200 VAYSLTDFE--------SAETETAGDELQPNSQDIDERDPRKRPGDWYCTECKFLNFAKN 251
Query: 255 TICLQCDA---------------------------------------------KRPKRQL 269
CL+CD K RQ+
Sbjct: 252 IRCLRCDVFSEERLKQLKEEQKDHLPLKKGDWICQTCNFLNFSKNTRCLRCKDKPTLRQI 311
Query: 270 LPGEWECPRCNFLNYRRNMSCFHCEHNRPPDEYTNSQMEANQSVPRKRLERPAHKSEVCN 329
PGEWEC CN++N+RRN C C+H R Q AN + K + +S V
Sbjct: 312 NPGEWECESCNYINFRRNSICLKCDHKR--------QKAANVTPDSKTV--ADRQSGVTK 361
Query: 330 AWNF 333
W+F
Sbjct: 362 TWSF 365
>AT1G48570.1 | chr1:17955455-17957661 REVERSE LENGTH=456
Length = 455
Score = 164 bits (416), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 110/329 (33%), Positives = 158/329 (48%), Gaps = 69/329 (20%)
Query: 15 HPWPEWIELMDRLAQQKYFDLGGTGGADEGCVAAAVPMDLAEVTQETGFD-FSRDWTTVK 73
HPWPEWI +DRL + YF T++T D ++ VK
Sbjct: 60 HPWPEWITFVDRLKTKGYF------------------------TKDTEDDTVYQEMILVK 95
Query: 74 NACMNFGRDRFDIVKSLPRKDLQVLVGHGCPSMDPKVVFSAKLIRKLVHLDEGDVCSSCN 133
+AC++F RDR+D+++SL D+Q LV GCP++ K V S+K IR V L+EGDVC SC+
Sbjct: 96 DACLSFARDRYDVLRSLSSGDVQALVERGCPNLFRKTVNSSKRIRAHVKLNEGDVCGSCD 155
Query: 134 LRNLCSRGYILTR-KEDEARTLDVMRILLFYGFDHV----------KETVEN---KPLLK 179
LR+ C R Y++ + E +ART+DVMR+LLF D + KE V + LL+
Sbjct: 156 LRSSCDRAYVILKDTEADARTVDVMRLLLFNALDSIVISRGEVPPGKELVHESARRLLLE 215
Query: 180 LK--SVKTVVRKLIHDIAKLSAVPI-----------------------DPNLXXXXXXXX 214
L S K ++ L +K S++P DP+
Sbjct: 216 LVEFSEKPLIPALPKPSSKESSLPSKERAFKSRNDEPSQRVAFKSRNDDPSQRVAFKSRN 275
Query: 215 XXXXXXXXXXXXX-XXGRDDVEMKKGDWLCPKCDFMNFAKNTICLQCDA---KRPKRQLL 270
+ D + DW CPKCDF+NFA+N C +C+ +RP ++
Sbjct: 276 DEPSHRVAFKSRNDESSQRDRPLYSADWACPKCDFVNFARNERCRECNEVADRRPVAAVV 335
Query: 271 P-GEWECPRCNFLNYRRNMSCFHCEHNRP 298
G+W CP C+FLN+ RN SC C+ P
Sbjct: 336 KEGDWLCPECSFLNFTRNQSCLKCKAKGP 364
Score = 82.4 bits (202), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 36/65 (55%), Positives = 44/65 (67%)
Query: 234 VEMKKGDWLCPKCDFMNFAKNTICLQCDAKRPKRQLLPGEWECPRCNFLNYRRNMSCFHC 293
VEMKKGDW C C +MNFA N C +C +R K PG+WECP C+F+N+RRN +C C
Sbjct: 373 VEMKKGDWNCTGCGYMNFASNKQCRECREQRHKTLAEPGDWECPSCDFVNFRRNDACKKC 432
Query: 294 EHNRP 298
E RP
Sbjct: 433 ECKRP 437
>AT5G17790.1 | chr5:5869810-5872671 REVERSE LENGTH=759
Length = 758
Score = 140 bits (354), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 94/291 (32%), Positives = 142/291 (48%), Gaps = 42/291 (14%)
Query: 18 PEWIELMDRLAQQKYFDLGGTGGADEGCVAAAVPMDLAEVTQETGFDFSRDWTTVKNACM 77
PEW EL+ L++ YF G+ E P +L AC+
Sbjct: 93 PEWTELLQSLSKAGYFSDSGSISGLESEFFPGFPDELLRPAL---------------ACL 137
Query: 78 NFGRDRFDIVKSLPRKDLQVLVGHGCPSMDPKVVFSA---KLIRKLVHLDEGDVCSSCNL 134
R+R ++++ L R+D++VLV +G P +F L R ++L G
Sbjct: 138 ALARERPELLEMLSRRDVEVLVENGKP-----FLFKTGPDSLKRMSLYLRSG-------- 184
Query: 135 RNLCSRGYILTRKEDEARTLDVMRILLFYGFDHVKETVENKPLLKLKSVKTVVRKLIHDI 194
L G ++ ++A T+D+MR++L Y D V + E+K K + +++ VR L+ I
Sbjct: 185 --LQGIGKLMDM--EKASTVDLMRLILSYVVD-VASSEESKQHNK-EIMESSVRSLLSQI 238
Query: 195 AKLSAVPIDPNLXXXXXXXXXXXXXXXXXXXXXXXGRDDVEMKKGDWLCPKCDFMNFAKN 254
AK+S P + N+ +++VEMK+GDW+C +C MNFA+N
Sbjct: 239 AKMSLRPPESNVHDTMQNQYSDRDGQGVRSF-----QNNVEMKRGDWICSRCSGMNFARN 293
Query: 255 TICLQCDAKRPKRQLLPGEWECPRCNFLNYRRNMSCFHCEHNRPPDEYTNS 305
C QCD RPKRQL EWECP+C+F NY RN++C C+ RP D NS
Sbjct: 294 VKCFQCDEARPKRQLTGSEWECPQCDFYNYGRNVACLRCDCKRPRDSSLNS 344
>AT1G53460.1 | chr1:19954558-19956509 REVERSE LENGTH=315
Length = 314
Score = 57.0 bits (136), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 42/138 (30%), Positives = 65/138 (47%), Gaps = 9/138 (6%)
Query: 70 TTVKNACMNFGRDRFDIVKSLPRKDLQVLVGHGCPSMDPKVVFSAKLIRKLVHLDEGDVC 129
T VK A FG+D +I K L DL+ +V GCPS++ + VF+AK +R + E +VC
Sbjct: 181 TFVKFAAERFGKDYQEIAKWLSGSDLKKIVLFGCPSLEKRAVFAAKTLRNFFDIHENNVC 240
Query: 130 SSCNLRNLCS--RGYILTRKEDEARTLDVMRILLFYGFDHVKETVENKPLLKL-KSVKTV 186
C L+ C + K VM+++ Y D P L++ + V+
Sbjct: 241 EKCVLKEKCKFPNQSVWDGKTKHLHLSVVMKVITLYPLDL------THPKLQVPQEVQDS 294
Query: 187 VRKLIHDIAKLSAVPIDP 204
V +L+ +I LS P
Sbjct: 295 VSRLLTEIQNLSRTICTP 312
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.318 0.134 0.418
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 14,134,248
Number of extensions: 603528
Number of successful extensions: 1646
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 1634
Number of HSP's successfully gapped: 10
Length of query: 647
Length of database: 11,106,569
Length adjustment: 105
Effective length of query: 542
Effective length of database: 8,227,889
Effective search space: 4459515838
Effective search space used: 4459515838
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 115 (48.9 bits)