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Os03g0708900

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Zinc finger, RanBP2-type domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 10 (0.0265) R2 : 0.834
β1 : 1.48 (0.0972) R2dD : 0.0877 R2D : 0.0737
β2 : 3.09 (0.0678) R2dC : 0.761 R2C : 0.747
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0526 (0.0567) R2dN8 : 0.000422 R2N8 : -0.00334
σ : 0.499
deviance : 113.67
__
_____
C
peak time of C : 16.2
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
97.74 0.465 10 1.45 2.72 -0.912 1.13 0.511 -0.016 16.9 40.84 91 -- --
98.4 0.462 10 1.45 2.72 -0.964 0.953 -- -0.0152 16.9 44.51 91 -- --
100.68 0.467 10 1.46 2.73 -0.892 -- 0.215 -0.00494 16.9 41.81 91 -- --
100.72 0.467 10 1.45 2.73 -0.927 -- -- -0.00874 16.9 43.8 91 -- --
238.27 0.719 10 1.24 -- -3.38 -- -0.0693 -0.284 -- 171.6 447 -- --
112.07 0.496 10 1.47 3.09 -- 0.756 -- 0.0485 16.2 -- -- -- --
113.67 0.499 10 1.48 3.09 -- -- -- 0.0526 16.2 -- -- -- --
128.58 0.528 9.96 1.16 -- -2.92 -- -- -0.0471 -- 2.548 516 -- --
155.3 0.58 10.1 -- 2.57 -0.96 -- -- -0.159 17 31.07 122 -- --
631.78 1.17 9.98 1.35 -- -- -- -- -0.0297 -- -- -- -- --
171.31 0.612 10 -- 3.06 -- -- -- -0.112 16.2 -- -- -- --
169.28 0.606 10 -- -- -3.09 -- -- -0.221 -- 0.9991 531 -- --
680.14 1.22 10 -- -- -- -- -- -0.18 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 87.62 wind 9.0 270 < th dose independent rect. 5 22
2 87.75 wind 5.0 270 < th dose independent rect. 3 2
3 87.78 atmosphere 995.0 90 > th dose dependent rect. 8 19
5 88.08 atmosphere 995.0 10 > th dose dependent rect. 9 19
7 88.14 wind 1.0 270 > th dose independent rect. 3 2
8 88.21 wind 5.0 90 < th dose independent rect. 3 5
9 88.32 atmosphere 1010.0 270 < th dose independent rect. 11 11
12 88.50 wind 9.0 90 < th dose independent rect. 8 19
13 88.51 precipitation 0.1 90 < th dose independent rect. 8 19
14 88.51 precipitation 0.1 90 < th dose dependent rect. 8 19
15 88.61 radiation 30.0 90 < th dose independent rect. 3 6
21 88.94 radiation 40.0 270 < th dose dependent rect. 11 20
22 88.96 precipitation 0.1 90 < th dose independent rect. 3 5
23 88.96 precipitation 0.1 90 < th dose dependent rect. 3 5
29 89.12 precipitation 0.1 270 < th dose independent rect. 3 2
30 89.12 precipitation 0.1 270 < th dose dependent rect. 3 2
33 89.20 temperature 10.0 90 > th dose dependent rect. 3 5
35 89.23 radiation 1.0 270 < th dose dependent rect. 3 2
40 89.33 temperature 10.0 90 > th dose independent rect. 3 5
42 89.33 temperature 30.0 90 < th dose independent rect. 3 5
43 89.33 humidity 50.0 90 > th dose independent rect. 3 5
46 89.33 atmosphere 995.0 90 > th dose independent rect. 3 5
47 89.33 atmosphere 1015.0 90 < th dose independent rect. 3 5
48 89.33 temperature 10.0 90 > th dose independent rect. 8 19
50 89.42 temperature 10.0 270 > th dose independent rect. 3 2
52 89.42 temperature 30.0 270 < th dose independent rect. 3 2
53 89.42 humidity 50.0 270 > th dose independent rect. 3 2
56 89.42 atmosphere 995.0 270 > th dose independent rect. 3 2
57 89.42 atmosphere 1010.0 270 < th dose independent rect. 3 2
59 89.42 radiation 20.0 270 < th dose independent rect. 3 2
62 89.42 temperature 10.0 270 > th dose independent rect. 5 22
63 89.42 radiation 20.0 270 < th dose dependent rect. 3 2
67 89.45 radiation 1.0 270 < th dose independent rect. 3 2
70 89.56 temperature 10.0 270 > th dose dependent rect. 3 3
71 89.57 precipitation 0.1 270 < th dose independent rect. 5 22
72 89.57 precipitation 0.1 270 < th dose dependent rect. 5 22
73 89.58 temperature 15.0 270 > th dose independent rect. 11 10
75 89.61 radiation 40.0 270 < th dose dependent rect. 13 18
76 89.62 wind 9.0 10 < th dose independent rect. 9 19
96 90.08 temperature 30.0 270 < th dose dependent rect. 22 3
108 90.24 radiation 1.0 270 < th dose dependent rect. 3 15
109 90.27 wind 5.0 10 < th dose independent rect. 4 5
124 90.34 temperature 30.0 10 < th dose dependent rect. 22 6
126 90.35 radiation 30.0 270 < th dose dependent rect. 15 16
127 90.36 radiation 20.0 270 < th dose dependent rect. 2 6
132 90.39 radiation 40.0 10 < th dose independent rect. 4 5
138 90.43 atmosphere 1000.0 90 > th dose dependent rect. 3 5
139 90.44 precipitation 0.1 10 < th dose independent rect. 4 5
140 90.44 precipitation 0.1 10 < th dose dependent rect. 4 5
143 90.46 temperature 10.0 10 > th dose independent rect. 4 5
145 90.46 temperature 30.0 10 < th dose independent rect. 4 5
146 90.46 humidity 50.0 10 > th dose independent rect. 4 5
148 90.46 atmosphere 995.0 10 > th dose independent rect. 4 5
149 90.46 atmosphere 1015.0 10 < th dose independent rect. 4 5
151 90.46 temperature 10.0 10 > th dose independent rect. 9 19
182 90.57 radiation 40.0 270 < th dose independent rect. 11 20
196 90.71 atmosphere 1010.0 270 < th dose independent rect. 13 18
199 90.74 radiation 20.0 270 < th dose dependent rect. 2 15
206 90.79 wind 9.0 90 < th dose dependent rect. 3 5
210 90.84 radiation 20.0 270 < th dose dependent rect. 2 12
228 90.89 atmosphere 1010.0 270 < th dose independent rect. 15 16
234 90.92 wind 9.0 270 < th dose dependent rect. 3 2
239 90.93 radiation 1.0 270 < th dose independent rect. 3 15
240 90.93 atmosphere 1000.0 270 > th dose dependent rect. 3 2
256 91.07 wind 1.0 270 > th dose independent rect. 2 5
257 91.07 atmosphere 995.0 270 > th dose dependent rect. 20 6
268 91.13 radiation 40.0 270 < th dose dependent rect. 2 14
274 91.16 temperature 30.0 270 < th dose dependent rect. 23 1
282 91.18 humidity 70.0 90 > th dose independent rect. 3 8
307 91.28 temperature 10.0 10 > th dose dependent rect. 4 5
310 91.29 wind 9.0 270 < th dose independent rect. 21 14
338 91.37 temperature 10.0 270 > th dose independent rect. 21 14
339 91.37 atmosphere 995.0 270 > th dose independent rect. 21 14
348 91.40 humidity 50.0 270 > th dose dependent rect. 3 2
355 91.43 atmosphere 1010.0 270 < th dose independent rect. 17 14
356 91.43 radiation 20.0 270 < th dose independent rect. 15 15
363 91.45 radiation 20.0 90 < th dose independent rect. 13 20
369 91.47 radiation 40.0 90 < th dose independent rect. 3 19
371 91.47 atmosphere 995.0 270 > th dose dependent rect. 22 3
384 91.52 radiation 20.0 90 < th dose independent rect. 3 19
387 91.53 atmosphere 995.0 10 > th dose dependent rect. 22 6
393 91.57 radiation 40.0 90 < th dose dependent rect. 3 19
396 91.59 radiation 20.0 270 < th dose independent rect. 13 17
399 91.61 atmosphere 995.0 90 > th dose independent rect. 8 19
404 91.63 atmosphere 1000.0 10 > th dose dependent rect. 4 4
406 91.64 wind 9.0 10 < th dose dependent rect. 4 5
437 91.72 humidity 50.0 270 > th dose independent rect. 21 14
444 91.74 radiation 40.0 90 < th dose independent rect. 13 19
501 91.92 radiation 1.0 270 < th dose independent rect. 3 11
502 91.92 temperature 15.0 90 > th dose independent rect. 15 17
534 92.02 atmosphere 995.0 270 > th dose dependent rect. 23 1
609 92.30 precipitation 0.1 270 < th dose independent rect. 21 14
612 92.30 precipitation 0.1 270 < th dose dependent rect. 21 14
621 92.34 atmosphere 995.0 10 > th dose independent rect. 9 19
639 92.42 radiation 40.0 10 < th dose dependent rect. 4 19
657 92.50 radiation 40.0 10 < th dose dependent rect. 4 5
668 92.53 atmosphere 1000.0 270 > th dose independent rect. 20 6
669 92.53 atmosphere 1015.0 10 < th dose independent rect. 15 18
707 92.64 temperature 15.0 90 > th dose independent rect. 13 19
763 92.82 atmosphere 1000.0 10 > th dose independent rect. 22 6
767 92.82 radiation 10.0 270 < th dose dependent rect. 24 22
787 92.86 atmosphere 1000.0 90 > th dose independent rect. 22 5
789 92.86 radiation 30.0 10 < th dose independent rect. 12 21
791 92.87 atmosphere 1000.0 270 > th dose independent rect. 22 3
792 92.87 temperature 15.0 270 > th dose independent rect. 15 15
798 92.88 humidity 70.0 90 > th dose independent rect. 3 19
806 92.91 radiation 10.0 270 < th dose dependent rect. 1 20
816 92.94 humidity 70.0 90 > th dose independent rect. 3 12
820 92.95 humidity 50.0 90 > th dose dependent rect. 3 5
830 92.97 radiation 40.0 10 < th dose dependent rect. 12 21
857 93.02 wind 1.0 270 > th dose independent rect. 11 10
870 93.06 temperature 15.0 90 > th dose independent rect. 17 15
892 93.14 temperature 15.0 10 > th dose independent rect. 15 18
910 93.18 temperature 10.0 720 > th dose dependent rect. 19 3
921 93.21 radiation 1.0 270 > th dose independent sin 2 NA
953 93.27 atmosphere 1005.0 270 > th dose independent rect. 4 1
969 93.31 atmosphere 1015.0 10 < th dose independent rect. 13 20
974 93.33 humidity 70.0 90 > th dose independent rect. 3 14
993 93.39 atmosphere 1000.0 270 > th dose independent rect. 23 1
995 93.39 precipitation 0.1 270 < th dose independent rect. 11 10
998 93.39 precipitation 0.1 270 < th dose dependent rect. 11 10