Os01g0815700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Zinc finger, RanBP2-type domain containing protein.
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Os01g0815700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Zinc finger, RanBP2-type domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 61.74 | 0.369 | 11.9 | -0.857 | 2.41 | -0.797 | 0.195 | 0.169 | -0.607 | 15.1 | 12.76 | 123 | -- | -- |
| 61.77 | 0.366 | 11.9 | -0.859 | 2.41 | -0.801 | 0.0826 | -- | -0.607 | 15.1 | 12.83 | 125 | -- | -- |
| 61.81 | 0.366 | 11.9 | -0.849 | 2.42 | -0.792 | -- | 0.129 | -0.594 | 15.1 | 12.77 | 123 | -- | -- |
| 61.76 | 0.366 | 11.9 | -0.857 | 2.41 | -0.796 | -- | -- | -0.604 | 15.1 | 12.76 | 125 | -- | -- |
| 87.24 | 0.435 | 11.9 | -0.749 | -- | -2.56 | -- | 0.101 | -0.743 | -- | 2.274 | 331 | -- | -- |
| 78.83 | 0.416 | 11.9 | -0.757 | 3.06 | -- | 0.17 | -- | -0.536 | 14.7 | -- | -- | -- | -- |
| 78.94 | 0.416 | 11.9 | -0.753 | 3.07 | -- | -- | -- | -0.535 | 14.7 | -- | -- | -- | -- |
| 84.87 | 0.429 | 11.9 | -0.877 | -- | -2.57 | -- | -- | -0.647 | -- | 2.04 | 331 | -- | -- |
| 76.18 | 0.407 | 11.9 | -- | 2.42 | -0.773 | -- | -- | -0.478 | 15.1 | 9.92 | 130 | -- | -- |
| 627.43 | 1.17 | 11.9 | -0.884 | -- | -- | -- | -- | -0.613 | -- | -- | -- | -- | -- |
| 93.89 | 0.453 | 11.9 | -- | 3.08 | -- | -- | -- | -0.452 | 14.7 | -- | -- | -- | -- |
| 106.75 | 0.481 | 11.9 | -- | -- | -2.56 | -- | -- | -0.557 | -- | 2.172 | 325 | -- | -- |
| 648.03 | 1.19 | 11.9 | -- | -- | -- | -- | -- | -0.515 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 53.39 | temperature | 15.0 | 270 | > th | dose independent | rect. | 16 | 14 |
| 2 | 53.41 | radiation | 20.0 | 270 | < th | dose dependent | rect. | 2 | 12 |
| 4 | 53.58 | radiation | 20.0 | 270 | < th | dose dependent | rect. | 2 | 15 |
| 7 | 53.93 | radiation | 10.0 | 270 | < th | dose dependent | rect. | 2 | 17 |
| 11 | 53.99 | radiation | 10.0 | 270 | < th | dose independent | rect. | 2 | 17 |
| 20 | 54.42 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 3 | 3 |
| 23 | 54.52 | wind | 7.0 | 270 | < th | dose independent | rect. | 6 | 21 |
| 44 | 55.07 | radiation | 10.0 | 270 | < th | dose independent | rect. | 2 | 12 |
| 47 | 55.19 | radiation | 40.0 | 270 | < th | dose dependent | rect. | 11 | 20 |
| 52 | 55.45 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 6 | 21 |
| 53 | 55.45 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 6 | 21 |
| 65 | 55.63 | radiation | 40.0 | 270 | < th | dose dependent | rect. | 15 | 15 |
| 71 | 55.82 | radiation | 10.0 | 270 | < th | dose dependent | rect. | 3 | 3 |
| 72 | 55.87 | radiation | 10.0 | 270 | < th | dose independent | rect. | 2 | 9 |
| 73 | 55.88 | radiation | 10.0 | 270 | < th | dose independent | rect. | 3 | 3 |
| 77 | 55.93 | radiation | 10.0 | 270 | < th | dose independent | rect. | 2 | 6 |
| 80 | 55.96 | radiation | 10.0 | 270 | < th | dose independent | rect. | 15 | 16 |
| 82 | 55.98 | radiation | 40.0 | 270 | < th | dose dependent | rect. | 13 | 17 |
| 84 | 55.99 | radiation | 10.0 | 270 | < th | dose independent | rect. | 1 | 20 |
| 85 | 56.00 | radiation | 10.0 | 270 | < th | dose independent | rect. | 13 | 18 |
| 89 | 56.02 | atmosphere | 1010.0 | 270 | < th | dose independent | rect. | 3 | 3 |
| 97 | 56.09 | wind | 7.0 | 270 | < th | dose independent | rect. | 3 | 3 |
| 98 | 56.10 | radiation | 40.0 | 270 | < th | dose independent | rect. | 10 | 21 |
| 99 | 56.12 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 3 | 3 |
| 100 | 56.12 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 3 | 3 |
| 105 | 56.14 | temperature | 10.0 | 270 | > th | dose independent | rect. | 3 | 3 |
| 107 | 56.14 | temperature | 30.0 | 270 | < th | dose independent | rect. | 3 | 3 |
| 108 | 56.14 | humidity | 50.0 | 270 | > th | dose independent | rect. | 3 | 3 |
| 111 | 56.14 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 3 | 3 |
| 116 | 56.14 | temperature | 10.0 | 270 | > th | dose independent | rect. | 6 | 21 |
| 121 | 56.27 | radiation | 10.0 | 90 | < th | dose independent | rect. | 4 | 18 |
| 126 | 56.31 | radiation | 40.0 | 90 | < th | dose dependent | rect. | 4 | 18 |
| 133 | 56.37 | radiation | 10.0 | 270 | < th | dose dependent | sin | 3 | NA |
| 141 | 56.48 | radiation | 20.0 | 270 | < th | dose dependent | rect. | 1 | 20 |
| 180 | 56.91 | precipitation | 0.1 | 90 | < th | dose independent | rect. | 8 | 20 |
| 183 | 56.91 | precipitation | 0.1 | 90 | < th | dose dependent | rect. | 8 | 20 |
| 215 | 57.03 | radiation | 40.0 | 90 | < th | dose dependent | rect. | 4 | 11 |
| 234 | 57.17 | temperature | 15.0 | 270 | > th | dose independent | rect. | 11 | 11 |
| 268 | 57.39 | wind | 9.0 | 270 | < th | dose dependent | rect. | 3 | 3 |
| 317 | 57.68 | wind | 1.0 | 270 | > th | dose independent | rect. | 3 | 2 |
| 332 | 57.69 | temperature | 10.0 | 90 | > th | dose independent | rect. | 8 | 20 |
| 367 | 57.88 | humidity | 50.0 | 270 | > th | dose dependent | rect. | 3 | 3 |
| 410 | 58.08 | humidity | 50.0 | 14400 | > th | dose independent | rect. | 5 | 4 |
| 459 | 58.26 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 17 | 14 |
| 495 | 58.37 | temperature | 10.0 | 90 | > th | dose dependent | rect. | 8 | 19 |
| 510 | 58.43 | temperature | 10.0 | 10 | > th | dose dependent | rect. | 8 | 20 |
| 543 | 58.50 | radiation | 40.0 | 90 | < th | dose independent | rect. | 4 | 18 |
| 567 | 58.52 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 16 | 14 |
| 645 | 58.81 | temperature | 15.0 | 10 | > th | dose dependent | rect. | 18 | 14 |
| 652 | 58.86 | radiation | 40.0 | 270 | < th | dose independent | rect. | 11 | 10 |
| 654 | 58.86 | temperature | 15.0 | 10 | > th | dose independent | rect. | 18 | 14 |
| 661 | 58.91 | radiation | 10.0 | 270 | < th | dose independent | sin | 4 | NA |
| 669 | 58.95 | atmosphere | 995.0 | 270 | > th | dose dependent | rect. | 3 | 3 |
| 679 | 58.98 | temperature | 15.0 | 1440 | > th | dose independent | rect. | 4 | 5 |
| 711 | 59.13 | humidity | 60.0 | 90 | > th | dose dependent | rect. | 4 | 17 |
| 740 | 59.25 | wind | 9.0 | 270 | < th | dose independent | rect. | 6 | 10 |
| 832 | 59.58 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 11 | 10 |
| 846 | 59.65 | wind | 7.0 | 270 | < th | dose independent | rect. | 21 | 14 |
| 865 | 59.69 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 6 | 10 |
| 868 | 59.69 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 6 | 10 |
| 897 | 59.79 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 19 | 3 |
| 934 | 59.93 | radiation | 40.0 | 90 | < th | dose dependent | sin | 2 | NA |