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Os03g0712200

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Zinc finger, RanBP2-type domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 6.75 (0.0252) R2 : 0.874
β1 : -- (--) R2dD : -- R2D : --
β2 : 2.8 (0.0604) R2dC : 0.597 R2C : 0.528
β3 : 2.62 (0.0758) R2dE : 0.332 R2E : 0.272
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.285 (0.0529) R2dN8 : 0.0101 R2N8 : 0.00987
σ : 0.472
deviance : 102.64
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C
peak time of C : 22.9
E
wheather : temperature
threshold : 16.58
memory length : 226
response mode : > th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 10.1
open length of G : 9.33

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
97.8 0.465 6.74 0.383 2.8 2.61 0.575 -0.0844 0.321 22.9 15.64 240 10 9.22
97.8 0.461 6.74 0.395 2.8 2.6 0.597 -- 0.323 22.9 15.78 239 10 9.22
99.15 0.464 6.75 0.368 2.8 2.59 -- -0.163 0.31 22.9 15.78 239 10 9.2
99.19 0.464 6.75 0.372 2.8 2.58 -- -- 0.326 22.9 16.06 236 10.1 9.2
140.65 0.552 6.67 0.41 -- 3.95 -- 0.699 0.365 -- -3.83 781 9.75 9.08
167.74 0.607 6.74 0.701 3.34 -- 0.529 -- 0.465 20.6 -- -- -- --
168.64 0.608 6.74 0.684 3.34 -- -- -- 0.466 20.6 -- -- -- --
138.98 0.549 6.67 0.351 -- 3.83 -- -- 0.379 -- -5.023 827 9.67 8.34
102.64 0.472 6.75 -- 2.8 2.62 -- -- 0.285 22.9 16.58 226 10.1 9.33
793.81 1.32 6.65 0.672 -- -- -- -- 0.435 -- -- -- -- --
180.99 0.629 6.76 -- 3.33 -- -- -- 0.389 20.6 -- -- -- --
141.94 0.555 6.68 -- -- 3.88 -- -- 0.332 -- -1.919 827 9.69 8.32
805.73 1.32 6.67 -- -- -- -- -- 0.36 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 99.83 temperature 15 270 > th dose dependent rect. 10 9
22 104.83 temperature 20 10 > th dose dependent rect. 12 10
23 104.93 temperature 20 10 > th dose dependent rect. 12 8
41 106.69 temperature 25 90 > th dose dependent rect. 11 20
47 107.45 temperature 25 270 > th dose independent rect. 10 8
52 107.79 temperature 10 270 > th dose dependent rect. 10 20
62 108.02 temperature 25 10 > th dose dependent rect. 12 19
64 108.03 temperature 30 270 < th dose independent rect. 5 21
66 108.13 temperature 30 270 < th dose independent rect. 6 17
68 108.17 temperature 30 270 < th dose dependent rect. 6 15
93 109.22 temperature 30 90 < th dose independent rect. 7 20
100 109.38 temperature 25 90 > th dose dependent sin 19 NA
117 109.78 temperature 25 270 > th dose dependent sin 23 NA
146 110.54 temperature 10 90 > th dose dependent rect. 12 19
213 111.58 temperature 30 270 < th dose dependent sin 22 NA
287 113.22 temperature 25 270 > th dose dependent rect. 3 15
297 113.34 temperature 30 270 < th dose independent rect. 14 22
304 113.45 temperature 25 10 > th dose independent rect. 12 8
353 114.13 temperature 10 270 > th dose dependent rect. 2 15
420 114.98 temperature 10 270 > th dose dependent sin 22 NA
555 116.35 wind 7 270 < th dose independent rect. 9 22
575 116.62 temperature 10 90 > th dose dependent sin 20 NA
690 117.78 temperature 25 270 > th dose dependent no NA NA
725 118.17 wind 7 90 < th dose independent rect. 12 19
757 118.60 temperature 30 30 < th dose dependent rect. 8 19
780 118.94 temperature 30 270 < th dose independent rect. 5 7
826 119.54 temperature 15 10 > th dose dependent rect. 3 17
875 120.07 wind 7 270 < th dose independent rect. 12 17
908 120.48 temperature 30 270 < th dose independent rect. 15 10
998 121.74 temperature 30 270 < th dose independent sin 0 NA