BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0701200 Os03g0701200|AK099563
(276 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os03g0701200 Similar to Sugar-starvation induced protein (F... 560 e-160
Os03g0273800 Pyrimidine 5-nucleotidase family protein 229 1e-60
Os07g0634400 Pyrimidine 5-nucleotidase family protein 214 6e-56
Os01g0973000 Pyrimidine 5-nucleotidase family protein 211 5e-55
Os03g0834050 Ribosomal L23 and L15e, core domain containing... 117 7e-27
>Os03g0701200 Similar to Sugar-starvation induced protein (Fragment)
Length = 276
Score = 560 bits (1443), Expect = e-160, Method: Compositional matrix adjust.
Identities = 276/276 (100%), Positives = 276/276 (100%)
Query: 1 MASTAAASSPFDCVLFDLDDTLYPGSAGIGLATKRNIDEFLMARCGVTAERAAALRVELF 60
MASTAAASSPFDCVLFDLDDTLYPGSAGIGLATKRNIDEFLMARCGVTAERAAALRVELF
Sbjct: 1 MASTAAASSPFDCVLFDLDDTLYPGSAGIGLATKRNIDEFLMARCGVTAERAAALRVELF 60
Query: 61 RSYGSSLAGLIALGYDVHPDEYHSYVHGRLPYDRIAADPQLAGLLRSIPQRKILFTNSDR 120
RSYGSSLAGLIALGYDVHPDEYHSYVHGRLPYDRIAADPQLAGLLRSIPQRKILFTNSDR
Sbjct: 61 RSYGSSLAGLIALGYDVHPDEYHSYVHGRLPYDRIAADPQLAGLLRSIPQRKILFTNSDR 120
Query: 121 AHMRKALQRLSVDEGCFDAVVCFETMNPHLFGEAPCASGDDRPGVILKPSPDAIVAALRI 180
AHMRKALQRLSVDEGCFDAVVCFETMNPHLFGEAPCASGDDRPGVILKPSPDAIVAALRI
Sbjct: 121 AHMRKALQRLSVDEGCFDAVVCFETMNPHLFGEAPCASGDDRPGVILKPSPDAIVAALRI 180
Query: 181 AGTNPHRTLFLDDSERNIAAGKALSLRTVLVGKRVRSKEADYALESIGSLRRAIPEIWGG 240
AGTNPHRTLFLDDSERNIAAGKALSLRTVLVGKRVRSKEADYALESIGSLRRAIPEIWGG
Sbjct: 181 AGTNPHRTLFLDDSERNIAAGKALSLRTVLVGKRVRSKEADYALESIGSLRRAIPEIWGG 240
Query: 241 VAVAVAGEQLDHGAAEKTKGMRSDLDSIIQPTSVLA 276
VAVAVAGEQLDHGAAEKTKGMRSDLDSIIQPTSVLA
Sbjct: 241 VAVAVAGEQLDHGAAEKTKGMRSDLDSIIQPTSVLA 276
>Os03g0273800 Pyrimidine 5-nucleotidase family protein
Length = 283
Score = 229 bits (585), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 117/246 (47%), Positives = 163/246 (66%), Gaps = 19/246 (7%)
Query: 11 FDCVLFDLDDTLYPGSAGIGLATKRNIDEFLMARCGVTAERAAALRVELFRSYGSSLAGL 70
FDC+LFDLDDTLYP S+GI K+NI ++++ + G+ + L L+++YG+++AGL
Sbjct: 15 FDCLLFDLDDTLYPLSSGIASHVKKNIGDYMVEKLGIEESKIENLGNLLYKNYGTTMAGL 74
Query: 71 IALGYDVHPDEYHSYVHGRLPYDRIAADPQLAGLLRSIPQRKILFTNSDRAHMRKALQRL 130
A+GY DEYHS+VHGRLPY+ I DP L +L+++ RK++FTN D+ H +AL+RL
Sbjct: 75 RAIGYSFDYDEYHSFVHGRLPYENIKPDPVLKHILKNLRIRKLIFTNGDKDHAVRALKRL 134
Query: 131 SVDEGCFDAVVCFETMN-----PHLFGEA-----------PCASGDDRP--GVILKPSPD 172
+ E CF+ ++CFET+N P GEA P A+ D+ P V+ KP+ D
Sbjct: 135 GL-EDCFEGIICFETLNPPCPSPPCDGEASIFDIAGHFSMPGAAADELPRTPVLCKPNVD 193
Query: 173 AIVAALRIAGTNPHRTLFLDDSERNIAAGKALSLRTVLVGKRVRSKEADYALESIGSLRR 232
A+ ALRIA NPH+ +F DDS RNI AGK + L TVLVG R K AD+ALESI ++R
Sbjct: 194 AMEEALRIANVNPHKAIFFDDSVRNIQAGKRIGLHTVLVGTPQRVKGADHALESIHNIRE 253
Query: 233 AIPEIW 238
A+PE+W
Sbjct: 254 ALPELW 259
>Os07g0634400 Pyrimidine 5-nucleotidase family protein
Length = 277
Score = 214 bits (545), Expect = 6e-56, Method: Compositional matrix adjust.
Identities = 109/269 (40%), Positives = 164/269 (60%), Gaps = 18/269 (6%)
Query: 7 ASSPFDCVLFDLDDTLYPGSAGIGLATKRNIDEFLMARCGVTAERAAALRVELFRSYGSS 66
A + FDC+LFD+DDTLYP S GI LA ++NI ++++ + + + ++L+R +G++
Sbjct: 6 AGAKFDCLLFDMDDTLYPLSLGINLACRKNIQDYMLNKLQIEESLVPKMCLDLYREFGTT 65
Query: 67 LAGLIALGYDVHPDEYHSYVHGRLPYDRIAADPQLAGLLRSIPQRKILFTNSDRAHMRKA 126
+AGL LGYD D++H+ VHG LPY+++ DP L LL S+PQRKI+FTNSD+AH
Sbjct: 66 MAGLKVLGYDFDYDDFHACVHGTLPYEKLKPDPVLRHLLLSLPQRKIIFTNSDKAHAATV 125
Query: 127 LQRLSVDEGCFDAVVCFETMNPHLFGEAPCASGDD------------RPGVILKPSPDAI 174
L++L + E CF+ ++CFET+NP E + D + ++ KPS +++
Sbjct: 126 LKKLGL-EDCFEGIICFETLNPSTEPEEDDSDSTDGGSSSDSSASHRKRKILCKPSLESM 184
Query: 175 VAALRIAGTNPHRTLFLDDSERNIAAGKALSLRTVLVGKRVRSKEADYALESIGSLRRAI 234
A + IA + +T+F DDS RNIAAGKA TV+VG AD ALESI +++ A+
Sbjct: 185 EAVIEIAKLDAMKTVFFDDSPRNIAAGKAAGFHTVIVGSSAAVAGADVALESIHNIKEAV 244
Query: 235 PEIWGGVAVAVAGEQLDHGAAEKTKGMRS 263
PE+W AGE + A+ +RS
Sbjct: 245 PELWEA-----AGEHVQAQLAQAAVDLRS 268
>Os01g0973000 Pyrimidine 5-nucleotidase family protein
Length = 281
Score = 211 bits (537), Expect = 5e-55, Method: Compositional matrix adjust.
Identities = 107/245 (43%), Positives = 152/245 (62%), Gaps = 20/245 (8%)
Query: 12 DCVLFDLDDTLYPGSAGIGLATKRNIDEFLMARCGVTAERAAALRVELFRSYGSSLAGLI 71
D ++FDLDDTLYP ++GIG RNI +++ + GV + L V L++ YG+++AGL
Sbjct: 16 DSLVFDLDDTLYPVTSGIGADVVRNIQAYMIEKLGVEESISLELCVLLYKQYGTTMAGLR 75
Query: 72 ALGYDVHPDEYHSYVHGRLPYDRIAADPQLAGLLRSIPQRKILFTNSDRAHMRKALQRLS 131
A+GY D++HSYVHGRL Y++I DP L +L S+P RK++FTN DR H +AL+RL
Sbjct: 76 AVGYQFDYDDFHSYVHGRLAYEKIKPDPVLRNILLSLPIRKVVFTNGDRIHASRALKRLG 135
Query: 132 VDEGCFDAVVCFETMNP------------------HLFGEAPCASGDDRPGVILKPSPDA 173
+ E CF+ VVCFET+NP HL P P ++ KP+ DA
Sbjct: 136 I-EDCFERVVCFETLNPTSSSLSAAGQVEIFDIMKHLAHPEPGVELPKSP-ILCKPNIDA 193
Query: 174 IVAALRIAGTNPHRTLFLDDSERNIAAGKALSLRTVLVGKRVRSKEADYALESIGSLRRA 233
+ AL++A NP ++ DDS RNI A K + + TVLVG R K AD+ALES+ +++ A
Sbjct: 194 MRQALKVASINPKTSILFDDSARNIQAAKLIGMYTVLVGTSERIKGADHALESLHNMKEA 253
Query: 234 IPEIW 238
+PE+W
Sbjct: 254 LPELW 258
>Os03g0834050 Ribosomal L23 and L15e, core domain containing protein
Length = 113
Score = 117 bits (294), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 53/106 (50%), Positives = 76/106 (71%)
Query: 9 SPFDCVLFDLDDTLYPGSAGIGLATKRNIDEFLMARCGVTAERAAALRVELFRSYGSSLA 68
S ++C+LFDLDDTLYP S+GI LA ++NI +++ + + A + +EL++ YG+++A
Sbjct: 8 SKYECLLFDLDDTLYPFSSGINLACRKNIQDYMRRHLRIEESQIADMCLELYKEYGTTMA 67
Query: 69 GLIALGYDVHPDEYHSYVHGRLPYDRIAADPQLAGLLRSIPQRKIL 114
GL ALGY+ DE+H+ VHG LPYD + DP L LL SIPQRKI+
Sbjct: 68 GLKALGYEFDNDEFHANVHGTLPYDNLHFDPVLRTLLLSIPQRKIV 113
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.320 0.136 0.398
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 9,409,331
Number of extensions: 389124
Number of successful extensions: 891
Number of sequences better than 1.0e-10: 5
Number of HSP's gapped: 886
Number of HSP's successfully gapped: 5
Length of query: 276
Length of database: 17,035,801
Length adjustment: 99
Effective length of query: 177
Effective length of database: 11,866,615
Effective search space: 2100390855
Effective search space used: 2100390855
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 155 (64.3 bits)