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Os01g0973000

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Pyrimidine 5-nucleotidase family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 6.44 (0.0384) R2 : 0.718
β1 : 2 (0.192) R2dD : 0.153 R2D : -0.0204
β2 : 1.9 (0.0893) R2dC : 0.277 R2C : 0.282
β3 : 3.58 (0.16) R2dE : 0.511 R2E : 0.302
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : 6.98 (0.556) R2dD*E : 0.289 R2D*E : -0.446
γ1 : 0.366 (0.0853) R2dN8 : 0.0197 R2N8 : 0.0342
σ : 0.66
deviance : 200.53
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C
peak time of C : 20.3
E
wheather : radiation
threshold : 1.148
memory length : 11456
response mode : > th
dose dependency : dose independent
G
type of G : no
peak or start time of G : --
open length of G : --

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
199.59 0.664 6.44 2.01 1.98 3.57 0.664 6.98 0.364 20.5 1.149 11519 -- --
280.12 0.78 6.61 0.72 2.05 3.2 1.66 -- 0.0533 19.7 1.95 10036 -- --
200.53 0.66 6.44 2 1.9 3.58 -- 6.98 0.366 20.3 1.148 11456 -- --
228.28 0.704 6.62 0.163 2.06 3.03 -- -- 0.022 19.2 1.51 31466 -- --
304.99 0.813 6.35 1.75 -- 4.11 -- 7.02 0.0824 -- 1.34 19675 -- --
419.22 0.96 6.46 1.21 1.99 -- 0.693 -- 0.761 20.7 -- -- -- --
420.79 0.961 6.46 1.19 1.99 -- -- -- 0.762 20.7 -- -- -- --
344.05 0.864 6.87 0.194 -- 4.14 -- -- -0.946 -- 1.904 19605 -- --
193.44 0.648 6.68 -- 1.99 3.04 -- -- -0.269 20.7 1.523 31783 -- --
643.67 1.19 6.4 1.18 -- -- -- -- 0.745 -- -- -- -- --
457.99 1 6.49 -- 1.98 -- -- -- 0.629 20.7 -- -- -- --
309.26 0.819 6.79 -- -- 4.19 -- -- -0.942 -- 1.57 22556 -- --
680.63 1.22 6.43 -- -- -- -- -- 0.614 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 182.31 humidity 80 43200 > th dose independent rect. 10 10
6 183.02 humidity 80 43200 < th dose independent rect. 10 9
24 183.90 humidity 90 43200 < th dose independent rect. 20 1
25 183.96 humidity 80 43200 > th dose dependent rect. 17 3
28 184.22 humidity 80 43200 > th dose dependent rect. 18 1
29 184.36 humidity 80 43200 > th dose independent rect. 15 3
33 184.54 humidity 80 43200 > th dose dependent rect. 8 14
42 184.75 humidity 80 43200 > th dose dependent rect. 14 7
57 185.11 humidity 90 43200 > th dose independent rect. 20 1
70 185.27 humidity 80 43200 > th dose independent rect. 16 1
90 185.60 humidity 80 43200 > th dose dependent sin 20 NA
105 185.91 humidity 80 43200 < th dose independent rect. 16 1
123 186.33 humidity 90 43200 < th dose independent rect. 13 11
146 186.64 humidity 90 43200 < th dose independent rect. 6 18
182 187.04 humidity 90 43200 < th dose independent rect. 8 16
214 187.33 humidity 90 43200 < th dose independent sin 19 NA
243 187.64 humidity 90 43200 > th dose dependent rect. 6 4
268 187.92 humidity 90 43200 > th dose independent rect. 6 20
276 188.01 humidity 90 43200 > th dose independent rect. 5 18
281 188.06 radiation 1 43200 < th dose independent rect. 17 15
314 188.28 humidity 80 43200 > th dose independent sin 22 NA
323 188.39 radiation 1 43200 < th dose independent sin 13 NA
324 188.39 radiation 1 43200 < th dose independent rect. 16 8
327 188.40 radiation 1 43200 < th dose independent rect. 16 4
357 188.49 radiation 1 43200 > th dose independent rect. 17 15
361 188.50 radiation 1 43200 > th dose independent rect. 16 17
385 188.66 humidity 90 43200 < th dose independent rect. 18 22
396 188.74 radiation 1 43200 > th dose independent rect. 17 13
403 188.77 radiation 1 43200 > th dose independent rect. 16 3
422 188.79 radiation 10 14400 < th dose dependent rect. 18 12
425 188.81 radiation 10 14400 < th dose dependent rect. 5 1
429 188.84 humidity 90 43200 < th dose independent rect. 13 23
430 188.85 radiation 1 43200 < th dose independent rect. 17 1
437 188.87 humidity 90 43200 > th dose independent rect. 1 22
440 188.89 radiation 1 43200 > th dose independent sin 12 NA
452 188.95 humidity 90 43200 < th dose independent no NA NA
459 188.97 humidity 90 43200 > th dose independent rect. 11 15
460 188.97 humidity 90 43200 < th dose independent rect. 18 18
483 189.03 humidity 90 43200 < th dose independent rect. 11 23
494 189.05 radiation 10 14400 < th dose dependent rect. 1 5
495 189.05 radiation 10 14400 < th dose dependent rect. 22 8
527 189.12 humidity 90 43200 > th dose independent rect. 15 11
557 189.20 humidity 90 43200 > th dose independent rect. 19 21
576 189.23 humidity 90 43200 > th dose independent sin 18 NA
621 189.29 humidity 90 43200 < th dose independent rect. 8 23
718 189.58 humidity 90 43200 > th dose independent rect. 11 23
723 189.59 humidity 90 43200 > th dose independent rect. 14 23
729 189.61 humidity 90 43200 > th dose independent no NA NA
780 189.71 radiation 1 43200 < th dose independent rect. 7 23
829 189.80 humidity 90 43200 > th dose independent rect. 8 23
855 189.86 humidity 90 43200 > th dose dependent rect. 22 1
926 190.19 humidity 90 43200 > th dose independent rect. 4 6
927 190.19 radiation 1 14400 > th dose independent rect. 5 12
929 190.20 radiation 1 43200 > th dose independent rect. 7 23
933 190.21 humidity 90 43200 > th dose independent rect. 6 5
960 190.31 radiation 1 14400 > th dose independent rect. 18 23
972 190.35 radiation 1 14400 < th dose independent rect. 5 12