Os03g0273800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Pyrimidine 5-nucleotidase family protein.
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Os03g0273800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Pyrimidine 5-nucleotidase family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = rect.)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 205.7 | 0.674 | 11.6 | -2.24 | 5.45 | -2.71 | 2.98 | 2.92 | -0.809 | 6.44 | 18.9 | 286 | 21.5 | 2.47 |
| 211.48 | 0.677 | 11.6 | -2.36 | 5.44 | -2.69 | 3.02 | -- | -0.798 | 6.41 | 18.9 | 285 | 21.5 | 2.53 |
| 227.67 | 0.703 | 11.6 | -2.19 | 5.45 | -2.71 | -- | 3.14 | -0.814 | 6.46 | 18.9 | 282 | 21.5 | 2.49 |
| 234.1 | 0.713 | 11.7 | -2.35 | 5.44 | -2.62 | -- | -- | -0.841 | 6.44 | 18.86 | 255 | 21.5 | 2.87 |
| 668.76 | 1.21 | 11.7 | -2.12 | -- | -5.17 | -- | -1.47 | -0.315 | -- | 12.49 | 4 | 13 | 12.7 |
| 314.54 | 0.831 | 11.7 | -2.55 | 5.43 | -- | 2.71 | -- | -0.987 | 7.11 | -- | -- | -- | -- |
| 333.79 | 0.856 | 11.7 | -2.49 | 5.43 | -- | -- | -- | -0.992 | 7.13 | -- | -- | -- | -- |
| 474.29 | 1.01 | 11.8 | -1.39 | -- | -5.22 | -- | -- | -0.613 | -- | 7.831 | 148 | 12.3 | 13.2 |
| 307.41 | 0.817 | 11.6 | -- | 5.62 | -3.78 | -- | -- | -0.401 | 6.32 | 2.745 | 1545 | 22.2 | 4.42 |
| 1892.69 | 2.03 | 11.8 | -2.39 | -- | -- | -- | -- | -0.896 | -- | -- | -- | -- | -- |
| 497.2 | 1.04 | 11.6 | -- | 5.41 | -- | -- | -- | -0.715 | 7.16 | -- | -- | -- | -- |
| 401.3 | 0.933 | 11.7 | -- | -- | -6 | -- | -- | -0.443 | -- | 0.7416 | 379 | 9.25 | 14.1 |
| 2043 | 2.11 | 11.7 | -- | -- | -- | -- | -- | -0.631 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 210.21 | temperature | 20.0 | 270 | > th | dose dependent | rect. | 22 | 2 |
| 2 | 210.22 | temperature | 20.0 | 270 | > th | dose dependent | rect. | 20 | 5 |
| 6 | 215.31 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 20 | 13 |
| 9 | 217.40 | temperature | 20.0 | 10 | > th | dose dependent | rect. | 23 | 4 |
| 16 | 222.12 | temperature | 20.0 | 270 | > th | dose independent | rect. | 20 | 5 |
| 20 | 222.84 | temperature | 10.0 | 90 | > th | dose dependent | rect. | 7 | 20 |
| 24 | 223.36 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 5 | 20 |
| 58 | 229.96 | temperature | 20.0 | 10 | > th | dose independent | rect. | 22 | 5 |
| 169 | 240.74 | temperature | 20.0 | 90 | > th | dose independent | rect. | 7 | 20 |
| 175 | 241.37 | radiation | 1.0 | 720 | < th | dose dependent | rect. | 17 | 12 |
| 212 | 244.55 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 17 | 14 |
| 215 | 244.66 | temperature | 20.0 | 270 | > th | dose independent | rect. | 5 | 20 |
| 229 | 245.40 | radiation | 1.0 | 720 | < th | dose dependent | rect. | 17 | 4 |
| 269 | 246.98 | temperature | 20.0 | 10 | > th | dose independent | rect. | 8 | 19 |
| 273 | 247.10 | radiation | 1.0 | 720 | > th | dose independent | rect. | 13 | 21 |
| 276 | 247.17 | temperature | 10.0 | 90 | > th | dose dependent | sin | 9 | NA |
| 278 | 247.36 | radiation | 1.0 | 720 | < th | dose dependent | rect. | 16 | 16 |
| 283 | 247.60 | radiation | 1.0 | 720 | < th | dose independent | rect. | 16 | 13 |
| 305 | 248.51 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 4 | 23 |
| 306 | 248.51 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 4 | 23 |
| 316 | 248.83 | radiation | 1.0 | 720 | < th | dose independent | rect. | 1 | 21 |
| 317 | 248.84 | radiation | 1.0 | 720 | < th | dose independent | rect. | 16 | 15 |
| 327 | 249.19 | radiation | 1.0 | 720 | < th | dose independent | rect. | 16 | 5 |
| 337 | 249.71 | temperature | 25.0 | 270 | > th | dose independent | rect. | 20 | 13 |
| 343 | 249.88 | temperature | 20.0 | 90 | > th | dose independent | rect. | 22 | 13 |
| 366 | 250.63 | radiation | 1.0 | 720 | < th | dose dependent | rect. | 1 | 21 |
| 392 | 251.44 | radiation | 1.0 | 720 | > th | dose independent | rect. | 15 | 18 |
| 395 | 251.48 | temperature | 15.0 | 10 | > th | dose dependent | rect. | 23 | 13 |
| 412 | 251.86 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 13 | 12 |
| 414 | 251.88 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 17 | 15 |
| 498 | 253.83 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 1 | 22 |
| 504 | 253.96 | radiation | 1.0 | 720 | > th | dose independent | sin | 12 | NA |
| 532 | 254.38 | temperature | 30.0 | 90 | < th | dose dependent | sin | 8 | NA |
| 544 | 254.57 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 13 | 4 |
| 596 | 255.62 | radiation | 1.0 | 720 | < th | dose independent | rect. | 3 | 18 |
| 625 | 256.17 | radiation | 1.0 | 720 | < th | dose dependent | sin | 12 | NA |
| 628 | 256.22 | radiation | 1.0 | 720 | < th | dose independent | sin | 12 | NA |
| 639 | 256.46 | radiation | 1.0 | 720 | < th | dose dependent | rect. | 3 | 18 |
| 655 | 256.70 | radiation | 1.0 | 720 | < th | dose independent | rect. | 6 | 15 |
| 693 | 257.36 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 11 | 19 |
| 697 | 257.44 | radiation | 1.0 | 720 | < th | dose dependent | rect. | 6 | 15 |
| 701 | 257.47 | radiation | 10.0 | 43200 | < th | dose dependent | rect. | 23 | 5 |
| 727 | 257.85 | temperature | 20.0 | 10 | > th | dose independent | rect. | 22 | 13 |
| 733 | 257.91 | temperature | 25.0 | 270 | > th | dose independent | sin | 10 | NA |
| 756 | 258.18 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 1 | 23 |
| 792 | 258.67 | temperature | 20.0 | 4320 | < th | dose independent | rect. | 20 | 1 |
| 812 | 258.91 | temperature | 15.0 | 10 | > th | dose dependent | rect. | 16 | 11 |
| 852 | 259.51 | precipitation | 0.1 | 720 | < th | dose independent | rect. | 5 | 20 |
| 854 | 259.51 | precipitation | 0.1 | 720 | < th | dose dependent | rect. | 5 | 20 |
| 860 | 259.59 | radiation | 20.0 | 720 | < th | dose dependent | rect. | 16 | 6 |
| 877 | 259.93 | temperature | 25.0 | 270 | < th | dose independent | sin | 10 | NA |
| 884 | 260.03 | temperature | 20.0 | 4320 | > th | dose independent | rect. | 20 | 2 |
| 887 | 260.09 | temperature | 25.0 | 270 | < th | dose independent | rect. | 16 | 19 |
| 901 | 260.21 | temperature | 25.0 | 270 | < th | dose independent | rect. | 17 | 12 |
| 917 | 260.35 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 17 | 19 |
| 936 | 260.54 | precipitation | 0.1 | 720 | < th | dose independent | rect. | 13 | 12 |
| 938 | 260.54 | precipitation | 0.1 | 720 | < th | dose dependent | rect. | 13 | 12 |
| 953 | 260.66 | radiation | 1.0 | 720 | < th | dose independent | rect. | 6 | 23 |
| 963 | 260.73 | radiation | 1.0 | 270 | < th | dose dependent | sin | 1 | NA |
| 973 | 260.81 | temperature | 25.0 | 270 | > th | dose independent | rect. | 19 | 20 |