BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0273800 Os03g0273800|AK100173
(283 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G02230.1 | chr5:449132-450507 FORWARD LENGTH=281 328 3e-90
AT5G59480.1 | chr5:23979619-23981156 REVERSE LENGTH=283 309 9e-85
AT5G59490.1 | chr5:23982922-23984419 REVERSE LENGTH=267 278 2e-75
AT3G62040.1 | chr3:22975328-22976518 REVERSE LENGTH=250 258 2e-69
AT2G32150.1 | chr2:13659095-13660531 FORWARD LENGTH=264 238 4e-63
>AT5G02230.1 | chr5:449132-450507 FORWARD LENGTH=281
Length = 280
Score = 328 bits (840), Expect = 3e-90, Method: Compositional matrix adjust.
Identities = 171/283 (60%), Positives = 209/283 (73%), Gaps = 3/283 (1%)
Query: 1 MEFEDRCHKVQEPKXXXXXXXXXXXXYPLSSGIASHVKKNIGDYMVEKLGIEESKIENLG 60
MEFE+R K YPLSSGIA NI DYM EKLGI + KI L
Sbjct: 1 MEFENRYGLATSQKYDCLLFDLDDTLYPLSSGIARECGNNIKDYMTEKLGIPKDKIVELS 60
Query: 61 NLLYKNYGTTMAGLRAIGYSFDYDEYHSFVHGRLPYENIKPDPVLKHILKNLRIRKLIFT 120
+LLYKNYGTTMAGLRAIGY FDYDEYHSFVHGRLPY+NIKPD VL+ +L +L +RK+IFT
Sbjct: 61 DLLYKNYGTTMAGLRAIGYEFDYDEYHSFVHGRLPYDNIKPDLVLRSLLLSLPLRKVIFT 120
Query: 121 NGDKDHAVRALKRLGLEDCFEGIICFETLNPPCPSPPCDGEASIFDIAGHFSMPGAAADE 180
N D+ HA +ALK+LGLEDCFEGIICFETLN + + IFDI GHF+
Sbjct: 121 NADRVHAAKALKKLGLEDCFEGIICFETLN-LMHTNAASNNSEIFDIVGHFNRSEPVG-S 178
Query: 181 LPRTPVLCKPNVDAMEEALRIANVNPHKAIFFDDSVRNIQAGKRIGLHTVLVGTPQRVKG 240
LP+TPV+CKP+ A+E+AL IAN++P++ +FF+DSVRN+QAGKR+GL+TVLVG +VKG
Sbjct: 179 LPKTPVVCKPSESAIEKALEIANIDPNRTLFFEDSVRNVQAGKRVGLYTVLVGKSTKVKG 238
Query: 241 ADHALESIHNIREALPELWEEAEKAEDVLIYSDRVAIETSVTA 283
AD+ALE+IHN++EA+PELWE K+ DV YS +VA+ETSV A
Sbjct: 239 ADYALENIHNMKEAIPELWESDRKSSDVG-YSGKVAVETSVRA 280
>AT5G59480.1 | chr5:23979619-23981156 REVERSE LENGTH=283
Length = 282
Score = 309 bits (792), Expect = 9e-85, Method: Compositional matrix adjust.
Identities = 151/281 (53%), Positives = 195/281 (69%), Gaps = 3/281 (1%)
Query: 1 MEFEDRCHKVQEPKXXXXXXXXXXXXYPLSSGIASHVKKNIGDYMVEKLGIEESKIENLG 60
M +E+ + E K YPLSSG+A VKKNI +YMV+KLGIEE K++ L
Sbjct: 1 MAYEEHFQQTSEAKYDCLLFDIDDTLYPLSSGLAMEVKKNIQEYMVQKLGIEEDKVQELC 60
Query: 61 NLLYKNYGTTMAGLRAIGYSFDYDEYHSFVHGRLPYENIKPDPVLKHILKNLRIRKLIFT 120
LYK YGTTMAGL+A+GY FDYD++H FVHGRLPY +KPDP+L++I+ +L IRK++FT
Sbjct: 61 LSLYKIYGTTMAGLKAVGYDFDYDDFHRFVHGRLPYSTLKPDPILRNIILSLPIRKVVFT 120
Query: 121 NGDKDHAVRALKRLGLEDCFEGIICFETLNPPCPS-PPCDGEA-SIFDIAGHFSMPGAAA 178
N DK HA + + RLGLE CFE II FETLNP + P D + IFDI + + P ++
Sbjct: 121 NADKAHAAKIIARLGLEGCFEKIISFETLNPITKTESPVDTKTREIFDIISYMANPDSSI 180
Query: 179 DELPRTPVLCKPNVDAMEEALRIANVNPHKAIFFDDSVRNIQAGKRIGLHTVLVGTPQRV 238
ELP+T V+CKP+ A E+ ++AN+NP K +FFDDS+RNIQ GKR+GLHTV VGT R
Sbjct: 181 -ELPKTSVVCKPSEGAFEQVFKMANINPKKTLFFDDSIRNIQTGKRVGLHTVWVGTSHRE 239
Query: 239 KGADHALESIHNIREALPELWEEAEKAEDVLIYSDRVAIET 279
+G D ALE IHNIREALP+LW+ + + +VAIET
Sbjct: 240 EGVDIALEHIHNIREALPQLWDAVDDKAKEIRTRQKVAIET 280
>AT5G59490.1 | chr5:23982922-23984419 REVERSE LENGTH=267
Length = 266
Score = 278 bits (712), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 143/260 (55%), Positives = 184/260 (70%), Gaps = 19/260 (7%)
Query: 27 YPLSSGIASHVKKNIGDYMVEKLGIEESKIENLGNLLYKNYGTTMAGLRAIGYSFDYDEY 86
YPLSSG++ NI +YMVEKLGI+E + L +LYK YGT+MAGL+A+GY FD DEY
Sbjct: 23 YPLSSGLSDACSNNIIEYMVEKLGIDEDGVVELNQILYKKYGTSMAGLKAVGYEFDNDEY 82
Query: 87 HSFVHGRLPYENIKPDPVLKHILKNLRIRKLIFTNGDKDHAVRALKRLGLEDCFEGIICF 146
H +VHGRLPYEN+KPDPVL+ +L L +RKL+F+NGD+ H ++AL RLG+EDCFE II F
Sbjct: 83 HRYVHGRLPYENLKPDPVLRSLLLGLPLRKLVFSNGDEVHVMKALTRLGIEDCFERIISF 142
Query: 147 ETLNPPCPSPPCDGEASIFDIAGHFSMPGAAADELPRTPVLCKPNVDAMEEALRIANVNP 206
ETLNP EA + + GH LP PV+CKP A E+A IA +NP
Sbjct: 143 ETLNPDI------NEAELSCVTGH----------LPENPVICKPTEIAFEKAFDIAQLNP 186
Query: 207 HKAIFFDDSVRNIQAGKRIGLHTVLVGTPQRVKGADHALESIHNIREALPELWEEA---E 263
HK +FFDDS RNIQ GK +GLHTVLVG +++ G+D+ALESIHN++EA PELW E+
Sbjct: 187 HKTLFFDDSTRNIQTGKAVGLHTVLVGKSEKIDGSDYALESIHNMKEAFPELWSESIINN 246
Query: 264 KAEDVLIYSDRVAIETSVTA 283
K + + Y+ +++IETSV A
Sbjct: 247 KETERIDYASQISIETSVQA 266
>AT3G62040.1 | chr3:22975328-22976518 REVERSE LENGTH=250
Length = 249
Score = 258 bits (660), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 136/260 (52%), Positives = 172/260 (66%), Gaps = 33/260 (12%)
Query: 27 YPLSSGIASHVKKNIGDYMVEKLGIEESKIENLGNLLYKNYGTTMAGLRAIGYSFDYDEY 86
YPLS GI + NI ++M+ +LGIEES++ L LYK YGTTMAGL+ +GY FD DE+
Sbjct: 20 YPLSIGINLACRNNIQEFMLNQLGIEESEVPKLCLDLYKEYGTTMAGLKVMGYEFDNDEF 79
Query: 87 HSFVHGRLPYENIKPDPVLKHILKNLRIRKLIFTNGDKDHAVRALKRLGLEDCFEGIICF 146
H +VHGRLPYE +KPDP+L+++L ++ RK+IFTN DK HA RAL RLGLEDCFEGIICF
Sbjct: 80 HEYVHGRLPYEKLKPDPLLRNLLLSMPHRKIIFTNADKAHATRALNRLGLEDCFEGIICF 139
Query: 147 ETLNPPCPSPPCDGEASIFDIAGHFSMPGAAADELPRTPVLCKPNVDAMEEALRIAN-VN 205
ETLNP S T +LCKP+V+A E A+RIA+ V+
Sbjct: 140 ETLNPSSDS---------------------------NTQILCKPSVEAFEAAIRIADIVD 172
Query: 206 PHKAIFFDDSVRNIQAGKRIGLHTVLVGTPQRVKGADHALESIHNIREALPELWEEA--E 263
P K IFFDDS+RNI + K GL TV VG V GAD+AL SIHNI+EA+P+LWE+ E
Sbjct: 173 PRKTIFFDDSIRNIASAKATGLKTVFVGESVLVPGADYALSSIHNIKEAIPDLWEDNKDE 232
Query: 264 KAEDVLIYSDRVAIETSVTA 283
K E ++ + A+ T V A
Sbjct: 233 KLEPIV---QQAAVATMVNA 249
>AT2G32150.1 | chr2:13659095-13660531 FORWARD LENGTH=264
Length = 263
Score = 238 bits (606), Expect = 4e-63, Method: Compositional matrix adjust.
Identities = 117/249 (46%), Positives = 167/249 (67%), Gaps = 21/249 (8%)
Query: 27 YPLSSGIASHVKKNIGDYMVEKLGIEESKIENLGNLLYKNYGTTMAGLRAIGYSFDYDEY 86
YPL +GIA VKKNI D++VEK G ESK +L L+K YG+T+AGLRA+G+ DEY
Sbjct: 18 YPLKTGIAPAVKKNIDDFLVEKFGFSESKASSLRVELFKTYGSTLAGLRALGHDVHPDEY 77
Query: 87 HSFVHGRLPYENIKPDPVLKHILKNLRIRKLIFTNGDKDHAVRALKRLGLEDCFEGIICF 146
HSFVHGRLPY +I+P+ L+++L ++ RK+IFTN DK+HAV+ LK+LGLEDCFE +ICF
Sbjct: 78 HSFVHGRLPYGSIEPNNKLRNLLNKIKQRKIIFTNSDKNHAVKVLKKLGLEDCFEEMICF 137
Query: 147 ETLNPPCPSPPCDGEASIFDIAGHFSMPGAAADELPRTPVLCKPNVDAMEEALRIANVNP 206
ET+NP ++ G + P DE PV+ KP++ AM+ +R+ANV+P
Sbjct: 138 ETMNP--------------NLFGSTTRP----DEY---PVVLKPSLTAMDICIRVANVDP 176
Query: 207 HKAIFFDDSVRNIQAGKRIGLHTVLVGTPQRVKGADHALESIHNIREALPELWEEAEKAE 266
+ +F DD++ NI AGK +GL T+LVG ++ K AD+A+E++ I A+PE+W A
Sbjct: 177 RRTVFLDDNIHNITAGKSVGLRTILVGRAEKTKDADYAVETVTEIATAVPEIWATATATG 236
Query: 267 DVLIYSDRV 275
+ +R+
Sbjct: 237 GFDVGGERI 245
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.319 0.138 0.414
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 6,298,861
Number of extensions: 272324
Number of successful extensions: 697
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 689
Number of HSP's successfully gapped: 5
Length of query: 283
Length of database: 11,106,569
Length adjustment: 97
Effective length of query: 186
Effective length of database: 8,447,217
Effective search space: 1571182362
Effective search space used: 1571182362
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 111 (47.4 bits)