BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0273800 Os03g0273800|AK100173
(283 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os03g0273800 Pyrimidine 5-nucleotidase family protein 555 e-158
Os01g0973000 Pyrimidine 5-nucleotidase family protein 345 3e-95
Os07g0634400 Pyrimidine 5-nucleotidase family protein 256 2e-68
Os03g0701200 Similar to Sugar-starvation induced protein (F... 205 3e-53
Os03g0834050 Ribosomal L23 and L15e, core domain containing... 104 6e-23
>Os03g0273800 Pyrimidine 5-nucleotidase family protein
Length = 283
Score = 555 bits (1429), Expect = e-158, Method: Compositional matrix adjust.
Identities = 271/283 (95%), Positives = 271/283 (95%)
Query: 1 MEFEDRCHKVQEPKXXXXXXXXXXXXYPLSSGIASHVKKNIGDYMVEKLGIEESKIENLG 60
MEFEDRCHKVQEPK YPLSSGIASHVKKNIGDYMVEKLGIEESKIENLG
Sbjct: 1 MEFEDRCHKVQEPKFDCLLFDLDDTLYPLSSGIASHVKKNIGDYMVEKLGIEESKIENLG 60
Query: 61 NLLYKNYGTTMAGLRAIGYSFDYDEYHSFVHGRLPYENIKPDPVLKHILKNLRIRKLIFT 120
NLLYKNYGTTMAGLRAIGYSFDYDEYHSFVHGRLPYENIKPDPVLKHILKNLRIRKLIFT
Sbjct: 61 NLLYKNYGTTMAGLRAIGYSFDYDEYHSFVHGRLPYENIKPDPVLKHILKNLRIRKLIFT 120
Query: 121 NGDKDHAVRALKRLGLEDCFEGIICFETLNPPCPSPPCDGEASIFDIAGHFSMPGAAADE 180
NGDKDHAVRALKRLGLEDCFEGIICFETLNPPCPSPPCDGEASIFDIAGHFSMPGAAADE
Sbjct: 121 NGDKDHAVRALKRLGLEDCFEGIICFETLNPPCPSPPCDGEASIFDIAGHFSMPGAAADE 180
Query: 181 LPRTPVLCKPNVDAMEEALRIANVNPHKAIFFDDSVRNIQAGKRIGLHTVLVGTPQRVKG 240
LPRTPVLCKPNVDAMEEALRIANVNPHKAIFFDDSVRNIQAGKRIGLHTVLVGTPQRVKG
Sbjct: 181 LPRTPVLCKPNVDAMEEALRIANVNPHKAIFFDDSVRNIQAGKRIGLHTVLVGTPQRVKG 240
Query: 241 ADHALESIHNIREALPELWEEAEKAEDVLIYSDRVAIETSVTA 283
ADHALESIHNIREALPELWEEAEKAEDVLIYSDRVAIETSVTA
Sbjct: 241 ADHALESIHNIREALPELWEEAEKAEDVLIYSDRVAIETSVTA 283
>Os01g0973000 Pyrimidine 5-nucleotidase family protein
Length = 281
Score = 345 bits (884), Expect = 3e-95, Method: Compositional matrix adjust.
Identities = 168/283 (59%), Positives = 208/283 (73%), Gaps = 2/283 (0%)
Query: 1 MEFEDRCHKVQEPKXXXXXXXXXXXXYPLSSGIASHVKKNIGDYMVEKLGIEESKIENLG 60
ME E K Q YP++SGI + V +NI YM+EKLG+EES L
Sbjct: 1 MECESNYSKEQRLNGDSLVFDLDDTLYPVTSGIGADVVRNIQAYMIEKLGVEESISLELC 60
Query: 61 NLLYKNYGTTMAGLRAIGYSFDYDEYHSFVHGRLPYENIKPDPVLKHILKNLRIRKLIFT 120
LLYK YGTTMAGLRA+GY FDYD++HS+VHGRL YE IKPDPVL++IL +L IRK++FT
Sbjct: 61 VLLYKQYGTTMAGLRAVGYQFDYDDFHSYVHGRLAYEKIKPDPVLRNILLSLPIRKVVFT 120
Query: 121 NGDKDHAVRALKRLGLEDCFEGIICFETLNPPCPSPPCDGEASIFDIAGHFSMPGAAADE 180
NGD+ HA RALKRLG+EDCFE ++CFETLNP S G+ IFDI H + P E
Sbjct: 121 NGDRIHASRALKRLGIEDCFERVVCFETLNPTSSSLSAAGQVEIFDIMKHLAHPEPGV-E 179
Query: 181 LPRTPVLCKPNVDAMEEALRIANVNPHKAIFFDDSVRNIQAGKRIGLHTVLVGTPQRVKG 240
LP++P+LCKPN+DAM +AL++A++NP +I FDDS RNIQA K IG++TVLVGT +R+KG
Sbjct: 180 LPKSPILCKPNIDAMRQALKVASINPKTSILFDDSARNIQAAKLIGMYTVLVGTSERIKG 239
Query: 241 ADHALESIHNIREALPELWEEAEKAEDVLIYSDRVAIETSVTA 283
ADHALES+HN++EALPELW+EA K EDV S +V IETSV A
Sbjct: 240 ADHALESLHNMKEALPELWDEAVKDEDVR-KSSKVGIETSVIA 281
>Os07g0634400 Pyrimidine 5-nucleotidase family protein
Length = 277
Score = 256 bits (653), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 137/262 (52%), Positives = 174/262 (66%), Gaps = 11/262 (4%)
Query: 27 YPLSSGIASHVKKNIGDYMVEKLGIEESKIENLGNLLYKNYGTTMAGLRAIGYSFDYDEY 86
YPLS GI +KNI DYM+ KL IEES + + LY+ +GTTMAGL+ +GY FDYD++
Sbjct: 22 YPLSLGINLACRKNIQDYMLNKLQIEESLVPKMCLDLYREFGTTMAGLKVLGYDFDYDDF 81
Query: 87 HSFVHGRLPYENIKPDPVLKHILKNLRIRKLIFTNGDKDHAVRALKRLGLEDCFEGIICF 146
H+ VHG LPYE +KPDPVL+H+L +L RK+IFTN DK HA LK+LGLEDCFEGIICF
Sbjct: 82 HACVHGTLPYEKLKPDPVLRHLLLSLPQRKIIFTNSDKAHAATVLKKLGLEDCFEGIICF 141
Query: 147 ETLNPPCPSPPCDGEASIFDIAGHFSMPGAAADELPRTPVLCKPNVDAMEEALRIANVNP 206
ETLN P + E D S ++A R +LCKP++++ME + IA ++
Sbjct: 142 ETLN-----PSTEPEEDDSDSTDGGSSSDSSASHRKRK-ILCKPSLESMEAVIEIAKLDA 195
Query: 207 HKAIFFDDSVRNIQAGKRIGLHTVLVGTPQRVKGADHALESIHNIREALPELWEEAEKAE 266
K +FFDDS RNI AGK G HTV+VG+ V GAD ALESIHNI+EA+PELWE A +
Sbjct: 196 MKTVFFDDSPRNIAAGKAAGFHTVIVGSSAAVAGADVALESIHNIKEAVPELWEAAGEHV 255
Query: 267 DVLIYSDRV-----AIETSVTA 283
+ V A+ET+V A
Sbjct: 256 QAQLAQAAVDLRSAAVETTVLA 277
>Os03g0701200 Similar to Sugar-starvation induced protein (Fragment)
Length = 276
Score = 205 bits (521), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 106/234 (45%), Positives = 151/234 (64%), Gaps = 19/234 (8%)
Query: 27 YPLSSGIASHVKKNIGDYMVEKLGIEESKIENLGNLLYKNYGTTMAGLRAIGYSFDYDEY 86
YP S+GI K+NI ++++ + G+ + L L+++YG+++AGL A+GY DEY
Sbjct: 23 YPGSAGIGLATKRNIDEFLMARCGVTAERAAALRVELFRSYGSSLAGLIALGYDVHPDEY 82
Query: 87 HSFVHGRLPYENIKPDPVLKHILKNLRIRKLIFTNGDKDHAVRALKRLGL-EDCFEGIIC 145
HS+VHGRLPY+ I DP L +L+++ RK++FTN D+ H +AL+RL + E CF+ ++C
Sbjct: 83 HSYVHGRLPYDRIAADPQLAGLLRSIPQRKILFTNSDRAHMRKALQRLSVDEGCFDAVVC 142
Query: 146 FETLNPPCPSPPCDGEASIFDIAGHFSMPGAAADELPRTPVLCKPNVDAMEEALRIANVN 205
FET+N P GEA P A+ D+ P V+ KP+ DA+ ALRIA N
Sbjct: 143 FETMN-----PHLFGEA-----------PCASGDDRP--GVILKPSPDAIVAALRIAGTN 184
Query: 206 PHKAIFFDDSVRNIQAGKRIGLHTVLVGTPQRVKGADHALESIHNIREALPELW 259
PH+ +F DDS RNI AGK + L TVLVG R K AD+ALESI ++R A+PE+W
Sbjct: 185 PHRTLFLDDSERNIAAGKALSLRTVLVGKRVRSKEADYALESIGSLRRAIPEIW 238
>Os03g0834050 Ribosomal L23 and L15e, core domain containing protein
Length = 113
Score = 104 bits (260), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 51/92 (55%), Positives = 67/92 (72%)
Query: 27 YPLSSGIASHVKKNIGDYMVEKLGIEESKIENLGNLLYKNYGTTMAGLRAIGYSFDYDEY 86
YP SSGI +KNI DYM L IEES+I ++ LYK YGTTMAGL+A+GY FD DE+
Sbjct: 22 YPFSSGINLACRKNIQDYMRRHLRIEESQIADMCLELYKEYGTTMAGLKALGYEFDNDEF 81
Query: 87 HSFVHGRLPYENIKPDPVLKHILKNLRIRKLI 118
H+ VHG LPY+N+ DPVL+ +L ++ RK++
Sbjct: 82 HANVHGTLPYDNLHFDPVLRTLLLSIPQRKIV 113
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.319 0.138 0.414
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 9,875,810
Number of extensions: 434836
Number of successful extensions: 1078
Number of sequences better than 1.0e-10: 5
Number of HSP's gapped: 1075
Number of HSP's successfully gapped: 5
Length of query: 283
Length of database: 17,035,801
Length adjustment: 100
Effective length of query: 183
Effective length of database: 11,814,401
Effective search space: 2162035383
Effective search space used: 2162035383
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 155 (64.3 bits)