Os07g0634400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Pyrimidine 5-nucleotidase family protein.
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Os07g0634400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Pyrimidine 5-nucleotidase family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 282.62 | 0.79 | 8.62 | -3.37 | 3.86 | 1.57 | 0.114 | 10.7 | 0.0511 | 7.9 | 1.773 | 4322 | -- | -- |
| 302.74 | 0.81 | 8.29 | -1.54 | 3.73 | 1.67 | 0.468 | -- | 0.637 | 8.06 | 77.56 | 29160 | -- | -- |
| 282.24 | 0.782 | 8.62 | -3.39 | 3.86 | 1.4 | -- | 10.2 | 0.0546 | 7.86 | 2.071 | 4316 | -- | -- |
| 297.4 | 0.803 | 8.29 | -1.4 | 3.82 | 1.77 | -- | -- | 0.652 | 8.16 | 16.43 | 29167 | -- | -- |
| 697.05 | 1.23 | 8.67 | -2.15 | -- | 4.03 | -- | 7.79 | 0.13 | -- | 3.347 | 5162 | -- | -- |
| 413.07 | 0.953 | 8.4 | -1.14 | 3.83 | -- | 0.0748 | -- | 0.368 | 7.98 | -- | -- | -- | -- |
| 413.09 | 0.952 | 8.4 | -1.14 | 3.83 | -- | -- | -- | 0.368 | 7.98 | -- | -- | -- | -- |
| 449.26 | 0.987 | 8.43 | -0.808 | -- | 5.45 | -- | -- | 0.728 | -- | 5.64 | 972 | -- | -- |
| 345.72 | 0.866 | 8.32 | -- | 4.01 | 1.71 | -- | -- | 0.801 | 8.14 | 14.7 | 29097 | -- | -- |
| 1212.77 | 1.63 | 8.5 | -1.1 | -- | -- | -- | -- | 0.417 | -- | -- | -- | -- | -- |
| 447.43 | 0.989 | 8.37 | -- | 3.82 | -- | -- | -- | 0.495 | 8 | -- | -- | -- | -- |
| 466.01 | 1.01 | 8.41 | -- | -- | 5.49 | -- | -- | 0.82 | -- | 4.743 | 973 | -- | -- |
| 1244.87 | 1.65 | 8.47 | -- | -- | -- | -- | -- | 0.54 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 254.63 | humidity | 80 | 43200 | > th | dose dependent | rect. | 9 | 1 |
| 2 | 255.32 | temperature | 25 | 43200 | > th | dose independent | rect. | 7 | 4 |
| 4 | 255.75 | temperature | 25 | 43200 | < th | dose independent | rect. | 7 | 4 |
| 9 | 256.37 | humidity | 80 | 43200 | > th | dose dependent | rect. | 8 | 8 |
| 16 | 256.99 | wind | 7 | 14400 | < th | dose dependent | rect. | 14 | 2 |
| 17 | 257.02 | temperature | 25 | 43200 | > th | dose independent | rect. | 2 | 12 |
| 18 | 257.03 | temperature | 25 | 43200 | > th | dose independent | rect. | 1 | 14 |
| 23 | 257.16 | temperature | 25 | 43200 | < th | dose independent | rect. | 6 | 6 |
| 27 | 257.24 | temperature | 25 | 43200 | > th | dose independent | sin | 4 | NA |
| 34 | 257.31 | temperature | 25 | 43200 | > th | dose independent | rect. | 1 | 17 |
| 49 | 257.47 | humidity | 80 | 43200 | > th | dose independent | rect. | 9 | 7 |
| 55 | 257.53 | wind | 1 | 14400 | > th | dose dependent | rect. | 14 | 2 |
| 81 | 257.82 | temperature | 25 | 43200 | < th | dose independent | rect. | 3 | 10 |
| 110 | 258.12 | temperature | 25 | 43200 | < th | dose independent | sin | 3 | NA |
| 126 | 258.25 | temperature | 25 | 43200 | < th | dose independent | rect. | 1 | 17 |
| 127 | 258.25 | temperature | 25 | 43200 | > th | dose independent | rect. | 7 | 21 |
| 134 | 258.28 | temperature | 25 | 43200 | < th | dose independent | rect. | 3 | 18 |
| 153 | 258.36 | temperature | 30 | 14400 | < th | dose independent | rect. | 12 | 1 |
| 197 | 258.54 | humidity | 80 | 43200 | > th | dose dependent | rect. | 8 | 3 |
| 214 | 258.64 | temperature | 25 | 43200 | > th | dose independent | no | NA | NA |
| 254 | 258.80 | temperature | 25 | 43200 | > th | dose independent | rect. | 17 | 23 |
| 272 | 258.87 | temperature | 25 | 43200 | > th | dose independent | rect. | 13 | 23 |
| 325 | 259.17 | temperature | 25 | 43200 | > th | dose dependent | rect. | 11 | 1 |
| 328 | 259.18 | temperature | 25 | 43200 | < th | dose independent | rect. | 7 | 22 |
| 375 | 259.42 | temperature | 25 | 43200 | > th | dose independent | sin | 19 | NA |
| 383 | 259.43 | temperature | 25 | 43200 | > th | dose dependent | rect. | 13 | 1 |
| 395 | 259.47 | temperature | 30 | 14400 | > th | dose independent | rect. | 12 | 1 |
| 408 | 259.54 | temperature | 25 | 43200 | < th | dose independent | no | NA | NA |
| 422 | 259.61 | temperature | 20 | 43200 | > th | dose dependent | rect. | 8 | 1 |
| 431 | 259.74 | temperature | 25 | 43200 | < th | dose independent | rect. | 13 | 23 |
| 441 | 259.82 | temperature | 25 | 43200 | < th | dose independent | rect. | 17 | 23 |
| 475 | 260.04 | temperature | 25 | 43200 | > th | dose dependent | rect. | 11 | 3 |
| 477 | 260.05 | temperature | 25 | 43200 | > th | dose independent | rect. | 13 | 9 |
| 481 | 260.07 | temperature | 25 | 43200 | > th | dose independent | rect. | 14 | 7 |
| 485 | 260.08 | temperature | 25 | 43200 | < th | dose independent | sin | 19 | NA |
| 533 | 260.41 | humidity | 80 | 43200 | > th | dose independent | rect. | 12 | 4 |
| 549 | 260.49 | humidity | 80 | 43200 | > th | dose independent | rect. | 13 | 1 |
| 551 | 260.50 | temperature | 25 | 43200 | < th | dose independent | rect. | 14 | 7 |
| 605 | 260.83 | humidity | 80 | 43200 | < th | dose independent | rect. | 9 | 7 |
| 672 | 261.21 | temperature | 25 | 43200 | < th | dose independent | rect. | 16 | 3 |
| 835 | 262.29 | temperature | 20 | 43200 | > th | dose dependent | sin | 1 | NA |
| 926 | 262.63 | humidity | 80 | 43200 | > th | dose dependent | rect. | 12 | 6 |
| 989 | 262.89 | humidity | 80 | 43200 | > th | dose independent | rect. | 10 | 1 |