BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os07g0634400 Os07g0634400|J075033C03
(277 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G62040.1 | chr3:22975328-22976518 REVERSE LENGTH=250 306 1e-83
AT5G59480.1 | chr5:23979619-23981156 REVERSE LENGTH=283 266 6e-72
AT5G02230.1 | chr5:449132-450507 FORWARD LENGTH=281 237 5e-63
AT5G59490.1 | chr5:23982922-23984419 REVERSE LENGTH=267 217 4e-57
AT2G32150.1 | chr2:13659095-13660531 FORWARD LENGTH=264 205 2e-53
>AT3G62040.1 | chr3:22975328-22976518 REVERSE LENGTH=250
Length = 249
Score = 306 bits (783), Expect = 1e-83, Method: Compositional matrix adjust.
Identities = 150/244 (61%), Positives = 176/244 (72%), Gaps = 22/244 (9%)
Query: 7 GAKFDCLLFDMDDTLYPLSLGINLACRKNIQDYMLNKLQIEESLVPKMCLDLYREFGTTM 66
GA ++CL FDMDDTLYPLS+GINLACR NIQ++MLN+L IEES VPK+CLDLY+E+GTTM
Sbjct: 5 GANYECLFFDMDDTLYPLSIGINLACRNNIQEFMLNQLGIEESEVPKLCLDLYKEYGTTM 64
Query: 67 AGLKVLGYDFDYDDFHACVHGTLPYEKLKPDPVLRHLLLSLPQRKIIFTNSDKAHAATVL 126
AGLKV+GY+FD D+FH VHG LPYEKLKPDP+LR+LLLS+P RKIIFTN+DKAHA L
Sbjct: 65 AGLKVMGYEFDNDEFHEYVHGRLPYEKLKPDPLLRNLLLSMPHRKIIFTNADKAHATRAL 124
Query: 127 KKLGLEDCFEGIICFETLNXXXXXXXXXXXXXXXXXXXXXXASHRKRKILCKPSLESMEA 186
+LGLEDCFEGIICFETLN +S +ILCKPS+E+ EA
Sbjct: 125 NRLGLEDCFEGIICFETLN---------------------PSSDSNTQILCKPSVEAFEA 163
Query: 187 VIEIAKL-DAMKTVFFDDSPRNIAAGKAAGFHTXXXXXXXXXXXXXXXLESIHNIKEAVP 245
I IA + D KT+FFDDS RNIA+ KA G T L SIHNIKEA+P
Sbjct: 164 AIRIADIVDPRKTIFFDDSIRNIASAKATGLKTVFVGESVLVPGADYALSSIHNIKEAIP 223
Query: 246 ELWE 249
+LWE
Sbjct: 224 DLWE 227
>AT5G59480.1 | chr5:23979619-23981156 REVERSE LENGTH=283
Length = 282
Score = 266 bits (681), Expect = 6e-72, Method: Compositional matrix adjust.
Identities = 131/273 (47%), Positives = 171/273 (62%), Gaps = 7/273 (2%)
Query: 5 TAGAKFDCLLFDMDDTLYPLSLGINLACRKNIQDYMLNKLQIEESLVPKMCLDLYREFGT 64
T+ AK+DCLLFD+DDTLYPLS G+ + +KNIQ+YM+ KL IEE V ++CL LY+ +GT
Sbjct: 10 TSEAKYDCLLFDIDDTLYPLSSGLAMEVKKNIQEYMVQKLGIEEDKVQELCLSLYKIYGT 69
Query: 65 TMAGLKVLGYDFDYDDFHACVHGTLPYEKLKPDPVLRHLLLSLPQRKIIFTNSDKAHAAT 124
TMAGLK +GYDFDYDDFH VHG LPY LKPDP+LR+++LSLP RK++FTN+DKAHAA
Sbjct: 70 TMAGLKAVGYDFDYDDFHRFVHGRLPYSTLKPDPILRNIILSLPIRKVVFTNADKAHAAK 129
Query: 125 VLKKLGLEDCFEGIICFETLNXXXXXXXXXXXXXXXXXXXXXXASH-------RKRKILC 177
++ +LGLE CFE II FETLN ++ K ++C
Sbjct: 130 IIARLGLEGCFEKIISFETLNPITKTESPVDTKTREIFDIISYMANPDSSIELPKTSVVC 189
Query: 178 KPSLESMEAVIEIAKLDAMKTVFFDDSPRNIAAGKAAGFHTXXXXXXXXXXXXXXXLESI 237
KPS + E V ++A ++ KT+FFDDS RNI GK G HT LE I
Sbjct: 190 KPSEGAFEQVFKMANINPKKTLFFDDSIRNIQTGKRVGLHTVWVGTSHREEGVDIALEHI 249
Query: 238 HNIKEAVPELWEAAGEHVXXXXXXXXVDLRSAA 270
HNI+EA+P+LW+A + V + + A
Sbjct: 250 HNIREALPQLWDAVDDKAKEIRTRQKVAIETIA 282
>AT5G02230.1 | chr5:449132-450507 FORWARD LENGTH=281
Length = 280
Score = 237 bits (605), Expect = 5e-63, Method: Compositional matrix adjust.
Identities = 126/246 (51%), Positives = 161/246 (65%), Gaps = 4/246 (1%)
Query: 9 KFDCLLFDMDDTLYPLSLGINLACRKNIQDYMLNKLQIEESLVPKMCLDLYREFGTTMAG 68
K+DCLLFD+DDTLYPLS GI C NI+DYM KL I + + ++ LY+ +GTTMAG
Sbjct: 14 KYDCLLFDLDDTLYPLSSGIARECGNNIKDYMTEKLGIPKDKIVELSDLLYKNYGTTMAG 73
Query: 69 LKVLGYDFDYDDFHACVHGTLPYEKLKPDPVLRHLLLSLPQRKIIFTNSDKAHAATVLKK 128
L+ +GY+FDYD++H+ VHG LPY+ +KPD VLR LLLSLP RK+IFTN+D+ HAA LKK
Sbjct: 74 LRAIGYEFDYDEYHSFVHGRLPYDNIKPDLVLRSLLLSLPLRKVIFTNADRVHAAKALKK 133
Query: 129 LGLEDCFEGIICFETLNXXXXXXXXXXXX----XXXXXXXXXXASHRKRKILCKPSLESM 184
LGLEDCFEGIICFETLN S K ++CKPS ++
Sbjct: 134 LGLEDCFEGIICFETLNLMHTNAASNNSEIFDIVGHFNRSEPVGSLPKTPVVCKPSESAI 193
Query: 185 EAVIEIAKLDAMKTVFFDDSPRNIAAGKAAGFHTXXXXXXXXXXXXXXXLESIHNIKEAV 244
E +EIA +D +T+FF+DS RN+ AGK G +T LE+IHN+KEA+
Sbjct: 194 EKALEIANIDPNRTLFFEDSVRNVQAGKRVGLYTVLVGKSTKVKGADYALENIHNMKEAI 253
Query: 245 PELWEA 250
PELWE+
Sbjct: 254 PELWES 259
>AT5G59490.1 | chr5:23982922-23984419 REVERSE LENGTH=267
Length = 266
Score = 217 bits (553), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 124/274 (45%), Positives = 166/274 (60%), Gaps = 14/274 (5%)
Query: 5 TAGAKFDCLLFDMDDTLYPLSLGINLACRKNIQDYMLNKLQIEESLVPKMCLDLYREFGT 64
++ +++CLLFD+DDTLYPLS G++ AC NI +YM+ KL I+E V ++ LY+++GT
Sbjct: 6 SSPPRYECLLFDLDDTLYPLSSGLSDACSNNIIEYMVEKLGIDEDGVVELNQILYKKYGT 65
Query: 65 TMAGLKVLGYDFDYDDFHACVHGTLPYEKLKPDPVLRHLLLSLPQRKIIFTNSDKAHAAT 124
+MAGLK +GY+FD D++H VHG LPYE LKPDPVLR LLL LP RK++F+N D+ H
Sbjct: 66 SMAGLKAVGYEFDNDEYHRYVHGRLPYENLKPDPVLRSLLLGLPLRKLVFSNGDEVHVMK 125
Query: 125 VLKKLGLEDCFEGIICFETLNXXXXXXXXXXXXXXXXXXXXXXASHRKRKILCKPSLESM 184
L +LG+EDCFE II FETLN + ++CKP+ +
Sbjct: 126 ALTRLGIEDCFERIISFETLN----------PDINEAELSCVTGHLPENPVICKPTEIAF 175
Query: 185 EAVIEIAKLDAMKTVFFDDSPRNIAAGKAAGFHTXXXXXXXXXXXXXXXLESIHNIKEAV 244
E +IA+L+ KT+FFDDS RNI GKA G HT LESIHN+KEA
Sbjct: 176 EKAFDIAQLNPHKTLFFDDSTRNIQTGKAVGLHTVLVGKSEKIDGSDYALESIHNMKEAF 235
Query: 245 PELWEAAGEHVXXXXXXXXVDLRSA-AVETTVLA 277
PELW E + +D S ++ET+V A
Sbjct: 236 PELW---SESIINNKETERIDYASQISIETSVQA 266
>AT2G32150.1 | chr2:13659095-13660531 FORWARD LENGTH=264
Length = 263
Score = 205 bits (521), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 102/244 (41%), Positives = 144/244 (59%), Gaps = 15/244 (6%)
Query: 8 AKFDCLLFDMDDTLYPLSLGINLACRKNIQDYMLNKLQIEESLVPKMCLDLYREFGTTMA 67
+ +CL+FD+DDTLYPL GI A +KNI D+++ K ES + ++L++ +G+T+A
Sbjct: 4 SPINCLIFDLDDTLYPLKTGIAPAVKKNIDDFLVEKFGFSESKASSLRVELFKTYGSTLA 63
Query: 68 GLKVLGYDFDYDDFHACVHGTLPYEKLKPDPVLRHLLLSLPQRKIIFTNSDKAHAATVLK 127
GL+ LG+D D++H+ VHG LPY ++P+ LR+LL + QRKIIFTNSDK HA VLK
Sbjct: 64 GLRALGHDVHPDEYHSFVHGRLPYGSIEPNNKLRNLLNKIKQRKIIFTNSDKNHAVKVLK 123
Query: 128 KLGLEDCFEGIICFETLNXXXXXXXXXXXXXXXXXXXXXXASHRKRKILCKPSLESMEAV 187
KLGLEDCFE +ICFET+N + ++ KPSL +M+
Sbjct: 124 KLGLEDCFEEMICFETMNPNLFGSTTRPD---------------EYPVVLKPSLTAMDIC 168
Query: 188 IEIAKLDAMKTVFFDDSPRNIAAGKAAGFHTXXXXXXXXXXXXXXXLESIHNIKEAVPEL 247
I +A +D +TVF DD+ NI AGK+ G T +E++ I AVPE+
Sbjct: 169 IRVANVDPRRTVFLDDNIHNITAGKSVGLRTILVGRAEKTKDADYAVETVTEIATAVPEI 228
Query: 248 WEAA 251
W A
Sbjct: 229 WATA 232
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.322 0.138 0.409
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 5,056,021
Number of extensions: 184142
Number of successful extensions: 363
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 359
Number of HSP's successfully gapped: 7
Length of query: 277
Length of database: 11,106,569
Length adjustment: 97
Effective length of query: 180
Effective length of database: 8,447,217
Effective search space: 1520499060
Effective search space used: 1520499060
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 111 (47.4 bits)