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Os03g0701200

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Sugar-starvation induced protein (Fragment).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 9.15 (0.0454) R2 : 0.831
β1 : -4.38 (0.167) R2dD : 0.268 R2D : 0.265
β2 : 1.94 (0.214) R2dC : 0.107 R2C : 0.376
β3 : 1.86 (0.156) R2dE : 0.196 R2E : 0.432
β4 : -2.16 (0.441) R2dD*C : 0.0106 R2D*C : 0.0104
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.0443 (0.0981) R2dN8 : 4.19e-05 R2N8 : -0.0022
σ : 0.844
deviance : 328.22
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_____
C
peak time of C : 14.1
E
wheather : temperature
threshold : 20.31
memory length : 19
response mode : > th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 6.34
open length of G : 14

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
326.76 0.849 9.16 -4.41 1.89 1.86 -1.64 -0.673 -0.0468 14.2 20.3 17 6.19 14
328.22 0.844 9.15 -4.38 1.94 1.86 -2.16 -- -0.0443 14.1 20.31 19 6.34 14
329.33 0.845 9.17 -4.48 2.17 1.65 -- -1.58 -0.0687 14.1 20.49 24 6.19 13.8
346.94 0.868 9.16 -4.44 1.93 1.79 -- -- -0.0752 14 20.4 38 6.07 14.1
374.73 0.902 9.18 -4.68 -- 3.08 -- -1.29 -0.147 -- 20.3 80 5.96 13.8
436.34 0.979 9.09 -4.1 4.04 -- -1.54 -- 0.185 14 -- -- -- --
445.44 0.988 9.09 -4.14 4.04 -- -- -- 0.176 13.9 -- -- -- --
384.68 0.913 9.19 -4.58 -- 3.11 -- -- -0.155 -- 20.4 80 5.93 13.8
837.67 1.35 9.02 -- 2.08 1.67 -- -- 0.53 14 15.12 20 6.62 14
1429.26 1.77 9.13 -4.31 -- -- -- -- 0.0819 -- -- -- -- --
897.64 1.4 8.99 -- 4.12 -- -- -- 0.637 14 -- -- -- --
871.08 1.37 9.03 -- -- 3.2 -- -- 0.579 -- 11.69 89 5.86 13.7
1919.08 2.04 9.03 -- -- -- -- -- 0.56 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 327.87 temperature 20.0 10 > th dose independent rect. 6 14
5 353.78 temperature 10.0 30 > th dose dependent rect. 6 14
6 354.09 temperature 20.0 270 > th dose independent rect. 6 1
7 354.44 wind 9.0 30 < th dose dependent rect. 20 10
11 355.67 temperature 15.0 30 > th dose independent rect. 20 10
14 356.35 atmosphere 1010.0 30 < th dose independent rect. 20 10
15 356.57 wind 1.0 43200 > th dose dependent rect. 1 3
18 357.11 wind 1.0 43200 > th dose dependent rect. 24 5
19 357.14 wind 5.0 43200 < th dose dependent rect. 1 4
34 358.97 radiation 40.0 1440 > th dose dependent rect. 14 20
35 358.98 radiation 1.0 14400 > th dose independent rect. 18 11
39 359.08 radiation 40.0 1440 > th dose dependent rect. 9 1
43 359.36 temperature 20.0 270 > th dose independent rect. 5 3
46 359.56 wind 7.0 30 < th dose dependent rect. 15 15
65 359.64 temperature 20.0 10 > th dose independent rect. 6 18
66 359.68 radiation 40.0 1440 > th dose dependent sin 11 NA
67 359.81 temperature 15.0 30 > th dose independent rect. 9 21
69 360.06 temperature 15.0 720 > th dose dependent rect. 6 1
71 360.29 radiation 1.0 14400 > th dose independent rect. 18 1
88 360.96 temperature 20.0 10 > th dose independent rect. 6 12
90 361.11 wind 7.0 30 < th dose dependent rect. 17 13
122 362.00 wind 9.0 43200 < th dose independent rect. 12 1
123 362.04 radiation 1.0 14400 < th dose independent rect. 18 11
127 362.29 radiation 40.0 1440 < th dose independent rect. 9 1
137 362.66 wind 5.0 30 < th dose independent rect. 15 15
151 363.17 humidity 90.0 14400 > th dose independent rect. 20 11
158 363.67 wind 9.0 43200 < th dose independent rect. 10 1
160 363.76 wind 3.0 43200 > th dose independent rect. 3 1
161 363.77 wind 3.0 43200 < th dose independent rect. 3 1
162 363.82 humidity 90.0 14400 > th dose independent rect. 22 10
183 364.09 wind 5.0 30 < th dose independent rect. 20 10
186 364.16 temperature 20.0 10 > th dose independent rect. 6 20
189 364.28 wind 7.0 43200 > th dose independent rect. 10 1
191 364.34 humidity 90.0 14400 > th dose independent rect. 22 4
195 364.41 humidity 90.0 14400 > th dose independent rect. 21 6
196 364.41 humidity 90.0 14400 > th dose independent rect. 20 8
223 365.17 atmosphere 1015.0 1440 < th dose independent rect. 1 6
224 365.20 temperature 15.0 10 > th dose independent rect. 11 19
225 365.30 temperature 20.0 270 > th dose independent rect. 4 13
226 365.31 wind 7.0 30 < th dose dependent rect. 12 18
233 365.54 temperature 20.0 43200 < th dose independent rect. 20 1
246 365.98 radiation 1.0 14400 < th dose independent rect. 18 2
251 366.03 radiation 1.0 14400 < th dose independent rect. 18 6
252 366.06 wind 9.0 43200 > th dose independent rect. 12 1
254 366.07 radiation 1.0 14400 < th dose independent rect. 18 4
261 366.17 humidity 90.0 14400 > th dose independent sin 10 NA
266 366.29 temperature 20.0 270 > th dose independent rect. 4 5
268 366.36 temperature 25.0 43200 < th dose dependent rect. 9 1
277 366.64 humidity 90.0 14400 > th dose dependent rect. 5 2
279 366.65 humidity 90.0 14400 < th dose independent rect. 20 7
285 366.93 temperature 25.0 43200 < th dose dependent rect. 8 3
286 366.94 humidity 80.0 270 > th dose independent rect. 6 1
304 367.28 temperature 20.0 43200 < th dose independent rect. 7 1
314 367.49 temperature 20.0 43200 > th dose independent rect. 7 1
317 367.52 temperature 20.0 43200 > th dose independent rect. 18 1
319 367.53 precipitation 0.1 10 < th dose independent rect. 20 10
320 367.53 precipitation 0.1 10 < th dose dependent rect. 20 10
323 367.58 temperature 20.0 43200 < th dose independent rect. 7 18
331 367.64 wind 7.0 43200 > th dose dependent rect. 10 1
334 367.67 humidity 90.0 14400 < th dose independent rect. 22 3
359 367.86 temperature 20.0 43200 < th dose independent rect. 11 13
364 367.88 humidity 90.0 14400 > th dose dependent rect. 4 4
370 367.91 temperature 20.0 43200 < th dose independent sin 19 NA
389 368.02 temperature 20.0 43200 > th dose independent rect. 7 17
392 368.03 radiation 1.0 43200 < th dose dependent rect. 21 8
417 368.17 wind 5.0 30 < th dose independent rect. 12 18
420 368.20 temperature 20.0 30 > th dose independent rect. 6 5
424 368.21 radiation 1.0 43200 < th dose dependent rect. 19 10
436 368.26 humidity 90.0 14400 < th dose independent rect. 19 12
461 368.36 wind 3.0 43200 < th dose independent rect. 24 5
486 368.47 temperature 20.0 43200 > th dose independent sin 19 NA
503 368.52 precipitation 0.1 43200 < th dose independent rect. 5 3
504 368.52 precipitation 0.1 43200 < th dose dependent rect. 5 3
518 368.57 precipitation 0.1 43200 > th dose dependent rect. 5 3
523 368.62 radiation 40.0 1440 > th dose independent rect. 9 1
540 368.69 temperature 10.0 30 > th dose dependent rect. 20 10
549 368.73 precipitation 0.1 43200 > th dose independent rect. 5 3
553 368.74 temperature 20.0 43200 > th dose independent rect. 14 10
562 368.76 radiation 10.0 4320 < th dose dependent rect. 3 2
580 368.86 wind 3.0 43200 > th dose independent rect. 24 5
583 368.88 temperature 20.0 43200 > th dose independent rect. 17 4
599 368.94 wind 7.0 43200 < th dose independent rect. 4 9
644 369.10 temperature 25.0 43200 < th dose dependent rect. 16 1
648 369.11 radiation 40.0 1440 < th dose dependent rect. 9 1
651 369.13 radiation 40.0 43200 < th dose dependent rect. 1 4
659 369.16 wind 7.0 43200 < th dose independent rect. 7 5
673 369.19 wind 1.0 43200 < th dose independent rect. 18 12
698 369.27 radiation 40.0 1440 > th dose independent rect. 15 19
702 369.28 radiation 1.0 1440 > th dose dependent rect. 8 4
712 369.30 temperature 25.0 43200 < th dose dependent rect. 14 4
745 369.40 wind 7.0 43200 > th dose independent rect. 4 9
779 369.48 temperature 20.0 43200 < th dose independent no NA NA
781 369.48 temperature 20.0 43200 < th dose independent rect. 23 23
782 369.48 wind 9.0 43200 > th dose dependent rect. 15 1
798 369.51 temperature 20.0 43200 < th dose independent rect. 13 23
800 369.51 temperature 20.0 43200 < th dose independent rect. 18 23
823 369.53 temperature 20.0 43200 < th dose independent rect. 10 23
930 369.77 temperature 20.0 43200 > th dose independent rect. 23 23
934 369.78 temperature 20.0 43200 > th dose independent no NA NA
952 369.81 temperature 20.0 43200 > th dose independent rect. 18 23
953 369.82 radiation 20.0 1440 > th dose independent rect. 9 1
958 369.82 temperature 20.0 43200 > th dose independent rect. 13 23
960 369.82 humidity 90.0 14400 > th dose dependent rect. 24 14
968 369.83 temperature 20.0 43200 > th dose independent rect. 16 23
973 369.84 temperature 20.0 43200 > th dose independent rect. 10 23