BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0687400 Os03g0687400|Os03g0687400
(248 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os03g0687400 Ribosome-inactivating protein family protein 356 7e-99
Os03g0683500 Conserved hypothetical protein 197 5e-51
Os03g0683200 Conserved hypothetical protein 147 5e-36
Os03g0687800 Conserved hypothetical protein 108 4e-24
Os03g0687700 Conserved hypothetical protein 102 3e-22
>Os03g0687400 Ribosome-inactivating protein family protein
Length = 248
Score = 356 bits (914), Expect = 7e-99, Method: Compositional matrix adjust.
Identities = 181/216 (83%), Positives = 181/216 (83%)
Query: 33 GEVRVERDLILVDLQDYGSGVGTLAVRPDVFSVAGFANRTGHWHALRGNDHLFRGDLVAT 92
GEVRVERDLILVDLQDYGSGVGTLAVRPDVFSVAGFANRTGHWHALRGNDHLFRGDLVAT
Sbjct: 33 GEVRVERDLILVDLQDYGSGVGTLAVRPDVFSVAGFANRTGHWHALRGNDHLFRGDLVAT 92
Query: 93 PLPFGSSYXXXXXXXXXXXXXXXXSPFTSYATVVLSGYDXXXXXEXXXXXXXXXXXXXXI 152
PLPFGSSY SPFTSYATVVLSGYD E I
Sbjct: 93 PLPFGSSYGDLVGGVNNLLGLPLGSPFTSYATVVLSGYDGGGGGEAAAVKRALATLAAVI 152
Query: 153 CEGQRLHPILETILTRGRGARVAAEHLPYIEHWDAMWEELKRWRRTGEWGGGPFAGELRE 212
CEGQRLHPILETILTRGRGARVAAEHLPYIEHWDAMWEELKRWRRTGEWGGGPFAGELRE
Sbjct: 153 CEGQRLHPILETILTRGRGARVAAEHLPYIEHWDAMWEELKRWRRTGEWGGGPFAGELRE 212
Query: 213 RASIGSAEEALAVVGWTFRQLLLGDGSIPAMCRAEL 248
RASIGSAEEALAVVGWTFRQLLLGDGSIPAMCRAEL
Sbjct: 213 RASIGSAEEALAVVGWTFRQLLLGDGSIPAMCRAEL 248
>Os03g0683500 Conserved hypothetical protein
Length = 270
Score = 197 bits (502), Expect = 5e-51, Method: Compositional matrix adjust.
Identities = 115/225 (51%), Positives = 134/225 (59%), Gaps = 14/225 (6%)
Query: 33 GEVRVER------DLILVDLQDYGSGVGTLAVRPDVFSVAGFANRTGHWHALRGNDHLFR 86
G+V VE LI+VDL +YGSG GTLA+R D AGFANR+GHWHALRGN HLF
Sbjct: 36 GQVAVESAATSRGKLIMVDLLEYGSGAGTLAMRVDTIHAAGFANRSGHWHALRGNGHLFD 95
Query: 87 G-DLVATPLPFGSSYXXXXXXXXXXXXXXXXSPFTSYATVVLSGYD----XXXXXEXXXX 141
L A LPFG++Y PFT+ A VLSGYD
Sbjct: 96 ALGLAAARLPFGNTYADLVGGVANLRGLPISMPFTNRAATVLSGYDPATAAAGGDGEAAL 155
Query: 142 XXXXXXXXXXICEGQRLHPILETILTRGRGARVAAEHLPYIEHWDAMWEELKRWRRT--G 199
I E QRL P+++T+L G GARVA EHLPYIEHWDAMWEEL RWRR+ G
Sbjct: 156 KRALATLTVAIGEAQRLRPVMDTLLFGGLGARVADEHLPYIEHWDAMWEELTRWRRSGGG 215
Query: 200 EWGGGPFAGELRERASIGSAEEALAVVGWTFRQLLLGDGSIPAMC 244
W GGPF G LRERA+IGSAE+ALAV+G FR LL ++P +
Sbjct: 216 AW-GGPFTGVLRERANIGSAEDALAVIGVAFRDHLLRGATMPDLS 259
>Os03g0683200 Conserved hypothetical protein
Length = 146
Score = 147 bits (372), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 73/95 (76%), Positives = 82/95 (86%), Gaps = 5/95 (5%)
Query: 152 ICEGQRLHPILETILTRGRG----ARVAAEHLPYIEHWDAMWEELKRWRRTGEWGGGPFA 207
ICE QRL P+++T+L G G ARVAAEHLPYIEHWDAMW+ELKRWRRTGEWGGGPFA
Sbjct: 38 ICETQRLRPVMDTVLATGGGRRGAARVAAEHLPYIEHWDAMWDELKRWRRTGEWGGGPFA 97
Query: 208 GELRERASIGSAEEALAVVGWTFRQLLL-GDGSIP 241
GELRERA IGSA+EALAV+GWTFR +LL DGS+P
Sbjct: 98 GELRERAKIGSAKEALAVIGWTFRHILLRRDGSMP 132
>Os03g0687800 Conserved hypothetical protein
Length = 197
Score = 108 bits (270), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 57/79 (72%), Positives = 60/79 (75%), Gaps = 7/79 (8%)
Query: 169 GRGARVAAEHLPYIEHWDAMWEELKRWRRTGEWGGGPFAGELRERASIGSAEEALAVVGW 228
G AR+A EHLPYIEHWDAMW EL RWRR GEW GGPF G LRERA+IGSAEEALAVVGW
Sbjct: 119 GEQARIADEHLPYIEHWDAMWHELGRWRRRGEW-GGPFTGVLRERANIGSAEEALAVVGW 177
Query: 229 TFRQLL------LGDGSIP 241
TFRQ LG G +P
Sbjct: 178 TFRQSAKAARRRLGGGDVP 196
Score = 72.8 bits (177), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 36/50 (72%), Positives = 40/50 (80%), Gaps = 1/50 (2%)
Query: 40 DLILVDLQDYGSGVGTLAVRPDVFSVAGFANRTGHWHALRGNDHLF-RGD 88
L +VDL D+GSG G LAVR D VAGFANR+GHWHALRG+DHLF RGD
Sbjct: 40 KLSMVDLLDFGSGAGALAVRVDTMFVAGFANRSGHWHALRGSDHLFHRGD 89
>Os03g0687700 Conserved hypothetical protein
Length = 244
Score = 102 bits (253), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 81/206 (39%), Positives = 97/206 (47%), Gaps = 20/206 (9%)
Query: 40 DLILVDLQDYGSGVGT-LAVRPDVFSVAGFANRTGHWHALRGNDHLFRGDLVATP----L 94
DL+ + L+ G G GT LA+ S AGF N + HWH +FRGD A P L
Sbjct: 41 DLVFLKLRS-GDGDGTVLAMHRHDISFAGFTNGSHHWH-------VFRGDEDAIPNARRL 92
Query: 95 PFGSSYXXXXXXXXXXXXXXXXSPFTSYATVVLSGYDXXXXXEXXXXXXXXXXXXXXICE 154
PF ++Y + A VL+ YD +
Sbjct: 93 PFRNTYRDLIGGLHHVPGLPLGKAAAARAAGVLASYDPDAEEGTAAVKRAVAALSVMFTQ 152
Query: 155 GQRLHPILETILT--RGRGARVAAEHLPYIEHWDAMWEELKRWRRTGEWGGGPFAGELRE 212
RL PI ET+ + ARVAAEHLPYIEHWD M E+ RWRRTGEW GPF LR
Sbjct: 153 ALRLEPIRETVSSGWESGEARVAAEHLPYIEHWDTMSFEVLRWRRTGEW-DGPFTEVLRR 211
Query: 213 RASIGSAEEALAV----VGWTFRQLL 234
RA I SA EALA+ +F QLL
Sbjct: 212 RAGIRSAGEALAIAKLLANRSFVQLL 237
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.322 0.140 0.447
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 6,923,055
Number of extensions: 276351
Number of successful extensions: 717
Number of sequences better than 1.0e-10: 6
Number of HSP's gapped: 711
Number of HSP's successfully gapped: 7
Length of query: 248
Length of database: 17,035,801
Length adjustment: 98
Effective length of query: 150
Effective length of database: 11,918,829
Effective search space: 1787824350
Effective search space used: 1787824350
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 155 (64.3 bits)