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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os03g0687800

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.23 (0.0308) R2 : 0.00335
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.0802 (0.0648) R2dN8 : 0.00433 R2N8 : 0.00335
σ : 0.579
deviance : 154.11
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = atmosphere, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
145.61 0.567 3.26 -0.127 0.291 0.473 -0.451 0.229 -0.165 22.3 1006 221 -- --
145.69 0.562 3.26 -0.12 0.293 0.468 -0.469 -- -0.165 22.3 1006 222 -- --
146.42 0.564 3.26 -0.117 0.292 0.458 -- 0.318 -0.161 22.3 1006 210 -- --
146.59 0.564 3.26 -0.106 0.295 0.455 -- -- -0.161 22.4 1006 220 -- --
151.18 0.576 3.25 -0.118 -- 0.423 -- 0.419 -0.153 -- 1006 186 -- --
148.88 0.572 3.24 -0.138 0.259 -- -0.416 -- -0.0951 22.4 -- -- -- --
149.58 0.573 3.24 -0.121 0.261 -- -- -- -0.0942 22.5 -- -- -- --
151.42 0.576 3.25 -0.105 -- 0.413 -- -- -0.154 -- 1006 169 -- --
146.85 0.564 3.26 -- 0.293 0.461 -- -- -0.152 22.4 1006 222 -- --
153.75 0.579 3.24 -0.117 -- -- -- -- -0.0932 -- -- -- -- --
149.97 0.573 3.24 -- 0.26 -- -- -- -0.0807 22.4 -- -- -- --
151.71 0.576 3.25 -- -- 0.418 -- -- -0.144 -- 1006 169 -- --
154.11 0.579 3.23 -- -- -- -- -- -0.0802 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 138.79 wind 3.0 10 < th dose dependent rect. 23 1
2 139.51 wind 3.0 30 < th dose independent rect. 23 1
7 140.06 precipitation 0.1 1440 > th dose independent rect. 12 1
9 140.06 precipitation 0.1 1440 > th dose dependent rect. 12 1
19 141.52 wind 3.0 10 < th dose dependent rect. 20 4
21 141.55 humidity 80.0 10 > th dose dependent rect. 23 1
23 141.75 wind 1.0 1440 > th dose independent rect. 17 1
28 141.84 wind 1.0 1440 < th dose independent rect. 17 1
29 141.88 radiation 10.0 90 < th dose dependent rect. 11 1
30 141.89 wind 1.0 1440 < th dose dependent rect. 17 1
36 142.11 wind 3.0 10 < th dose dependent rect. 17 7
46 142.30 temperature 25.0 270 < th dose independent rect. 1 1
48 142.36 humidity 70.0 90 > th dose dependent rect. 15 9
49 142.37 wind 3.0 10 < th dose dependent rect. 20 7
56 142.46 temperature 25.0 10 < th dose independent rect. 23 1
71 142.57 temperature 10.0 30 > th dose dependent rect. 24 23
77 142.62 wind 3.0 10 < th dose dependent rect. 17 10
84 142.67 humidity 80.0 30 > th dose independent rect. 23 1
101 142.81 atmosphere 1005.0 30 > th dose dependent rect. 2 1
102 142.82 temperature 20.0 30 > th dose dependent rect. 2 1
103 142.84 atmosphere 1015.0 30 < th dose independent rect. 23 1
104 142.84 humidity 80.0 90 > th dose independent rect. 15 9
108 142.85 temperature 20.0 30 > th dose independent rect. 2 1
120 142.90 temperature 30.0 90 < th dose dependent rect. 11 13
121 142.91 wind 1.0 30 < th dose independent rect. 2 1
122 142.91 temperature 25.0 30 < th dose independent rect. 2 1
123 142.91 wind 3.0 30 < th dose dependent rect. 2 1
127 142.93 atmosphere 1005.0 30 > th dose independent rect. 2 1
131 142.93 humidity 70.0 90 > th dose dependent rect. 11 13
132 142.94 humidity 80.0 30 > th dose independent rect. 2 1
138 142.96 wind 9.0 30 < th dose independent rect. 2 1
139 142.96 temperature 10.0 30 > th dose independent rect. 2 1
142 142.96 humidity 50.0 30 > th dose independent rect. 2 1
145 142.96 atmosphere 995.0 30 > th dose independent rect. 2 1
147 142.96 atmosphere 1010.0 30 < th dose independent rect. 2 1
149 142.96 radiation 1.0 30 < th dose independent rect. 2 1
154 142.96 precipitation 0.1 30 < th dose independent rect. 2 1
155 142.96 temperature 10.0 30 > th dose independent rect. 3 23
156 142.96 humidity 50.0 30 > th dose dependent rect. 2 1
159 142.96 radiation 1.0 30 < th dose dependent rect. 2 1
164 142.96 precipitation 0.1 30 < th dose dependent rect. 2 1
175 143.03 wind 9.0 10 < th dose independent rect. 24 23
180 143.05 humidity 60.0 4320 < th dose dependent rect. 18 2
195 143.07 atmosphere 1010.0 10 < th dose independent rect. 24 23
211 143.12 radiation 40.0 30 < th dose dependent rect. 24 11
217 143.16 atmosphere 1015.0 30 < th dose dependent rect. 24 23
219 143.18 humidity 60.0 1440 < th dose independent rect. 18 1
220 143.18 temperature 15.0 10 > th dose independent rect. 24 23
238 143.20 wind 9.0 1440 < th dose independent rect. 24 1
240 143.20 temperature 10.0 1440 > th dose independent rect. 24 1
243 143.20 temperature 30.0 1440 < th dose independent rect. 24 1
247 143.20 humidity 50.0 1440 > th dose independent rect. 24 1
257 143.20 atmosphere 995.0 1440 > th dose independent rect. 24 1
258 143.20 radiation 1.0 1440 < th dose independent rect. 24 1
278 143.20 precipitation 0.1 30 < th dose independent rect. 23 1
279 143.20 temperature 10.0 1440 > th dose independent rect. 1 23
282 143.20 atmosphere 1015.0 30 < th dose dependent rect. 2 1
283 143.20 radiation 1.0 1440 < th dose dependent rect. 24 1
288 143.20 radiation 40.0 14400 < th dose dependent rect. 24 1
289 143.20 precipitation 0.1 30 < th dose dependent rect. 23 1
304 143.21 humidity 60.0 1440 > th dose independent rect. 18 8
305 143.21 humidity 60.0 1440 > th dose independent rect. 18 10
314 143.23 temperature 10.0 30 > th dose independent rect. 23 1
316 143.23 humidity 50.0 30 > th dose independent rect. 23 1
319 143.23 atmosphere 995.0 30 > th dose independent rect. 23 1
320 143.23 radiation 1.0 30 < th dose independent rect. 23 1
327 143.23 temperature 30.0 30 < th dose dependent rect. 2 1
328 143.23 radiation 1.0 30 < th dose dependent rect. 23 1
339 143.25 humidity 50.0 1440 < th dose independent rect. 16 2
358 143.25 atmosphere 1015.0 30 < th dose dependent rect. 23 1
360 143.26 humidity 60.0 1440 > th dose independent rect. 18 2
375 143.29 humidity 50.0 1440 < th dose dependent rect. 16 2
405 143.30 humidity 60.0 1440 > th dose independent rect. 18 4
417 143.31 temperature 25.0 10 < th dose independent rect. 15 10
426 143.31 temperature 30.0 90 < th dose dependent rect. 15 9
451 143.34 humidity 50.0 1440 > th dose independent rect. 16 2
452 143.34 temperature 15.0 1440 > th dose independent rect. 21 4
460 143.35 humidity 50.0 1440 > th dose independent rect. 16 17
465 143.36 humidity 50.0 1440 > th dose independent rect. 16 11
471 143.36 radiation 40.0 30 < th dose dependent rect. 11 13
472 143.37 temperature 15.0 30 > th dose dependent rect. 12 11
473 143.38 humidity 50.0 1440 > th dose independent rect. 16 15
504 143.41 humidity 50.0 1440 > th dose independent rect. 16 4
509 143.41 humidity 50.0 1440 > th dose independent rect. 16 8
526 143.42 atmosphere 995.0 30 > th dose independent rect. 24 23
554 143.44 temperature 30.0 30 < th dose dependent rect. 23 1
617 143.51 wind 9.0 30 < th dose independent rect. 3 23
619 143.51 precipitation 0.1 30 < th dose independent rect. 24 23
625 143.51 precipitation 0.1 30 < th dose dependent rect. 24 23
646 143.53 radiation 1.0 4320 < th dose independent rect. 6 1
648 143.54 radiation 1.0 4320 > th dose independent rect. 6 1
662 143.56 temperature 30.0 30 < th dose dependent rect. 6 18
672 143.59 radiation 10.0 90 < th dose independent rect. 11 1
707 143.65 wind 1.0 30 > th dose independent rect. 2 1
716 143.65 temperature 30.0 30 < th dose dependent rect. 17 7
730 143.66 wind 3.0 270 < th dose independent rect. 17 7
740 143.68 temperature 25.0 10 < th dose independent rect. 22 5
781 143.70 wind 3.0 10 < th dose dependent rect. 12 15
784 143.71 temperature 20.0 30 > th dose independent rect. 12 11
804 143.75 wind 1.0 43200 < th dose independent rect. 17 2
838 143.79 wind 3.0 270 < th dose independent rect. 19 5
867 143.81 humidity 50.0 30 > th dose dependent rect. 24 11
871 143.82 wind 3.0 30 < th dose independent rect. 23 4
900 143.84 wind 3.0 10 < th dose dependent rect. 6 21
914 143.88 humidity 70.0 30 > th dose dependent rect. 20 4
916 143.88 humidity 70.0 90 > th dose dependent rect. 6 18
917 143.89 temperature 15.0 270 > th dose independent rect. 21 23
930 143.92 wind 3.0 10 < th dose independent rect. 20 4
932 143.92 radiation 40.0 90 < th dose independent rect. 11 13
979 143.94 temperature 25.0 30 > th dose independent rect. 12 16