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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os03g0683500

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.03 (0.0211) R2 : 0.00372
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0581 (0.0445) R2dN8 : 0.0048 R2N8 : 0.00372
σ : 0.398
deviance : 72.7
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
66.88 0.384 4.05 -2.61 0.158 156 0.279 -404 0.0716 11.7 47 9 -- --
66.94 0.384 3.03 0.0357 0.157 1.01 0.266 -- 0.0719 11.6 47 9 -- --
67.14 0.385 42.1 -101 0.159 6000 -- -15600 0.0722 11 47 9 -- --
67.19 0.384 3.03 0.0434 0.157 1.06 -- -- 0.0725 10.9 46.93 7 -- --
68.7 0.388 26.5 -60.9 -- 3600 -- -9360 0.0715 -- 47 9 -- --
69.83 0.392 3.03 0.0726 0.179 -- 0.406 -- 0.0679 11.9 -- -- -- --
70.48 0.393 3.03 0.0877 0.181 -- -- -- 0.0688 11.1 -- -- -- --
68.71 0.388 3.03 0.0369 -- 1.14 -- -- 0.0717 -- 46.93 7 -- --
67.24 0.384 3.03 -- 0.157 1.08 -- -- 0.0678 10.9 46.49 7 -- --
72.52 0.398 3.03 0.0835 -- -- -- -- 0.0673 -- -- -- -- --
70.68 0.393 3.03 -- 0.18 -- -- -- 0.059 11.1 -- -- -- --
68.75 0.387 3.03 -- -- 1.15 -- -- 0.0677 -- 46.93 7 -- --
72.7 0.398 3.03 -- -- -- -- -- 0.0581 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 64.23 temperature 20.0 30 > th dose dependent rect. 2 1
2 64.27 temperature 20.0 30 > th dose independent rect. 2 1
3 64.28 atmosphere 1005.0 30 > th dose dependent rect. 2 1
5 64.30 atmosphere 1005.0 30 > th dose independent rect. 2 1
10 64.35 wind 3.0 30 < th dose dependent rect. 2 1
12 64.36 wind 3.0 30 < th dose independent rect. 2 1
14 64.37 humidity 80.0 30 > th dose independent rect. 2 1
19 64.39 temperature 10.0 30 > th dose independent rect. 2 1
21 64.39 temperature 30.0 30 < th dose independent rect. 2 1
22 64.39 humidity 50.0 30 > th dose independent rect. 2 1
26 64.39 atmosphere 1010.0 30 < th dose independent rect. 2 1
28 64.39 radiation 1.0 30 < th dose independent rect. 2 1
33 64.39 precipitation 0.1 30 < th dose independent rect. 2 1
34 64.39 temperature 10.0 30 > th dose independent rect. 3 23
35 64.39 humidity 50.0 30 > th dose dependent rect. 2 1
36 64.39 radiation 1.0 30 < th dose dependent rect. 2 1
41 64.39 precipitation 0.1 30 < th dose dependent rect. 2 1
49 64.56 atmosphere 1015.0 30 < th dose dependent rect. 2 1
50 64.67 temperature 30.0 30 < th dose dependent rect. 2 1
51 64.71 wind 1.0 30 > th dose independent rect. 2 1
55 64.78 radiation 1.0 14400 < th dose dependent rect. 3 1
62 64.87 wind 9.0 1440 < th dose independent rect. 3 1
63 64.87 temperature 10.0 1440 > th dose independent rect. 3 1
66 64.87 temperature 30.0 1440 < th dose independent rect. 3 1
70 64.87 humidity 50.0 1440 > th dose independent rect. 3 1
79 64.87 atmosphere 995.0 1440 > th dose independent rect. 3 1
80 64.87 radiation 1.0 1440 < th dose independent rect. 3 1
100 64.87 temperature 10.0 1440 > th dose independent rect. 4 23
103 64.87 radiation 1.0 1440 < th dose dependent rect. 3 1
126 65.04 humidity 70.0 720 < th dose dependent rect. 7 2
183 65.22 atmosphere 995.0 30 > th dose independent rect. 3 23
184 65.28 humidity 60.0 270 < th dose independent rect. 8 1
236 65.32 wind 1.0 270 < th dose independent rect. 8 4
281 65.46 precipitation 0.1 30 < th dose independent rect. 3 23
282 65.46 precipitation 0.1 30 < th dose dependent rect. 3 23
330 65.58 wind 1.0 270 < th dose dependent rect. 8 4
334 65.70 humidity 50.0 720 > th dose independent rect. 3 8
335 65.73 humidity 70.0 10 < th dose dependent rect. 10 1
345 66.03 humidity 90.0 10 < th dose dependent rect. 11 1
349 66.09 wind 1.0 30 < th dose independent rect. 9 3
350 66.09 wind 9.0 30 < th dose independent rect. 3 23
351 66.11 humidity 60.0 1440 > th dose independent rect. 5 4
352 66.11 temperature 30.0 270 < th dose dependent rect. 8 3
355 66.12 temperature 30.0 270 < th dose dependent rect. 7 5
404 66.22 wind 3.0 270 < th dose dependent rect. 8 2
424 66.26 humidity 90.0 30 < th dose dependent rect. 7 5
453 66.33 humidity 90.0 10 < th dose dependent rect. 7 7
460 66.34 radiation 40.0 270 < th dose independent rect. 8 3
463 66.34 humidity 90.0 10 < th dose dependent rect. 11 3
513 66.42 humidity 60.0 1440 > th dose independent rect. 24 9
539 66.46 humidity 90.0 30 < th dose dependent rect. 3 9
547 66.49 humidity 70.0 10 < th dose independent rect. 10 1
566 66.55 temperature 30.0 30 < th dose independent rect. 3 23
573 66.55 humidity 90.0 30 < th dose dependent rect. 20 16
574 66.56 humidity 60.0 1440 > th dose independent rect. 22 11
586 66.57 temperature 25.0 270 < th dose independent rect. 8 2
608 66.58 wind 1.0 30 < th dose dependent rect. 9 3
642 66.61 humidity 90.0 270 < th dose dependent rect. 24 10
644 66.61 humidity 90.0 10 < th dose dependent rect. 20 18
647 66.62 humidity 60.0 1440 > th dose independent rect. 20 13
699 66.71 atmosphere 995.0 30 > th dose dependent rect. 11 1
741 66.75 radiation 20.0 30 > th dose independent rect. 11 1
771 66.79 humidity 80.0 10 < th dose independent rect. 11 3
784 66.80 radiation 20.0 30 > th dose dependent rect. 10 1
789 66.81 humidity 50.0 270 < th dose independent rect. 17 18
790 66.81 humidity 60.0 10 < th dose dependent sin 8 NA
811 66.84 atmosphere 1005.0 10 > th dose independent rect. 10 1
826 66.85 humidity 50.0 10 < th dose independent rect. 11 3
852 66.86 humidity 50.0 270 < th dose independent rect. 11 1
905 66.86 radiation 40.0 270 < th dose independent rect. 22 14
928 66.86 humidity 80.0 10 < th dose dependent sin 5 NA
929 66.86 humidity 50.0 270 < th dose dependent rect. 11 1
933 66.86 humidity 50.0 10 < th dose dependent rect. 11 3