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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os03g0687400

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Ribosome-inactivating protein family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.89 (0.0182) R2 : 0.0585
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.203 (0.0382) R2dN8 : 0.0755 R2N8 : 0.0585
σ : 0.342
deviance : 53.67
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = wind, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
51.24 0.336 2.9 0.0146 0.0336 -0.24 -0.158 1.17 0.199 0.82 1.1 16 -- --
52.29 0.339 2.89 0.0633 0.0422 -0.137 -0.264 -- 0.212 2 1.1 16 -- --
51.25 0.336 2.9 0.0173 0.0361 -0.216 -- 1.09 0.202 2.31 1.1 16 -- --
52.55 0.34 2.89 0.0721 0.0462 -0.128 -- -- 0.213 2.92 1.1 16 -- --
51.32 0.335 2.9 0.0163 -- -0.232 -- 1.1 0.203 -- 1.1 16 -- --
52.88 0.341 2.89 0.0804 0.0819 -- -0.241 -- 0.21 2.83 -- -- -- --
53.07 0.341 2.89 0.086 0.0837 -- -- -- 0.211 3.49 -- -- -- --
52.66 0.339 2.89 0.0716 -- -0.148 -- -- 0.215 -- 1.1 16 -- --
52.69 0.34 2.89 -- 0.0458 -0.135 -- -- 0.206 2.88 1.1 16 -- --
53.46 0.342 2.89 0.0896 -- -- -- -- 0.213 -- -- -- -- --
53.26 0.341 2.89 -- 0.0854 -- -- -- 0.202 3.49 -- -- -- --
52.78 0.338 2.88 -- -- -0.124 -- -- 0.218 -- 1.715 23 -- --
53.67 0.342 2.89 -- -- -- -- -- 0.203 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 46.88 atmosphere 1005.0 30 > th dose dependent rect. 2 1
2 46.89 temperature 20.0 30 > th dose dependent rect. 2 1
4 46.92 temperature 20.0 30 > th dose independent rect. 2 1
5 46.92 wind 3.0 30 < th dose dependent rect. 2 1
7 46.93 atmosphere 1005.0 30 > th dose independent rect. 2 1
12 46.94 wind 3.0 30 < th dose independent rect. 2 1
17 46.96 temperature 25.0 30 < th dose independent rect. 2 1
19 46.97 temperature 10.0 30 > th dose independent rect. 2 1
22 46.97 humidity 50.0 30 > th dose independent rect. 2 1
27 46.97 atmosphere 1010.0 30 < th dose independent rect. 2 1
29 46.97 radiation 1.0 30 < th dose independent rect. 2 1
34 46.97 precipitation 0.1 30 < th dose independent rect. 2 1
35 46.97 temperature 10.0 30 > th dose independent rect. 3 23
36 46.97 humidity 50.0 30 > th dose dependent rect. 2 1
39 46.97 radiation 1.0 30 < th dose dependent rect. 2 1
44 46.97 precipitation 0.1 30 < th dose dependent rect. 2 1
48 47.05 wind 9.0 1440 < th dose independent rect. 3 1
49 47.05 temperature 10.0 1440 > th dose independent rect. 3 1
52 47.05 temperature 30.0 1440 < th dose independent rect. 3 1
56 47.05 humidity 50.0 1440 > th dose independent rect. 3 1
65 47.05 atmosphere 995.0 1440 > th dose independent rect. 3 1
66 47.05 radiation 1.0 1440 < th dose independent rect. 3 1
86 47.05 temperature 10.0 1440 > th dose independent rect. 4 23
89 47.05 atmosphere 1015.0 30 < th dose dependent rect. 2 1
90 47.05 radiation 1.0 1440 < th dose dependent rect. 3 1
110 47.11 temperature 30.0 30 < th dose dependent rect. 2 1
113 47.21 wind 1.0 30 > th dose independent rect. 2 1
135 47.40 atmosphere 995.0 30 > th dose independent rect. 3 23
168 47.56 precipitation 0.1 30 < th dose independent rect. 3 23
169 47.56 precipitation 0.1 30 < th dose dependent rect. 3 23
173 47.73 wind 9.0 30 < th dose independent rect. 3 23
191 49.08 humidity 50.0 30 > th dose independent rect. 3 23
200 49.42 temperature 30.0 30 < th dose independent rect. 3 23
218 49.90 temperature 25.0 270 > th dose dependent rect. 22 9
247 50.00 temperature 25.0 270 > th dose independent rect. 22 5
252 50.06 atmosphere 1015.0 30 < th dose independent rect. 3 23
257 50.12 temperature 25.0 270 > th dose dependent rect. 22 5
266 50.27 temperature 25.0 270 > th dose independent rect. 22 2
270 50.30 temperature 25.0 270 > th dose independent rect. 22 8
278 50.36 temperature 25.0 270 > th dose dependent rect. 23 1
279 50.37 wind 1.0 10 > th dose independent rect. 23 23
283 50.40 wind 9.0 720 < th dose independent rect. 3 8
288 50.42 temperature 10.0 720 > th dose independent rect. 3 8
289 50.42 atmosphere 995.0 720 > th dose independent rect. 3 8
290 50.42 temperature 10.0 720 > th dose independent rect. 11 16
295 50.43 humidity 50.0 720 > th dose independent rect. 3 8
308 50.50 temperature 10.0 720 > th dose independent rect. 15 8
309 50.50 temperature 10.0 720 > th dose independent rect. 23 16
310 50.50 atmosphere 995.0 720 > th dose independent rect. 11 16
314 50.51 atmosphere 995.0 720 > th dose independent rect. 23 16
316 50.51 temperature 20.0 30 > th dose dependent rect. 22 5
325 50.55 atmosphere 995.0 720 > th dose independent rect. 15 8
327 50.55 radiation 10.0 10 < th dose dependent rect. 3 23
338 50.58 wind 9.0 720 < th dose independent rect. 19 8
341 50.58 wind 3.0 30 < th dose dependent rect. 22 5
342 50.59 precipitation 0.1 720 < th dose independent rect. 3 8
345 50.59 precipitation 0.1 720 < th dose dependent rect. 3 8
351 50.61 precipitation 0.1 720 < th dose independent rect. 19 8
356 50.61 precipitation 0.1 720 < th dose dependent rect. 19 8
357 50.62 humidity 90.0 90 < th dose independent rect. 2 1
358 50.62 temperature 10.0 720 > th dose independent rect. 7 8
359 50.62 temperature 10.0 720 > th dose independent rect. 19 8
361 50.62 temperature 30.0 720 < th dose independent rect. 19 8
362 50.62 humidity 50.0 720 > th dose independent rect. 19 8
363 50.62 atmosphere 995.0 720 > th dose independent rect. 19 8
364 50.62 atmosphere 1015.0 720 < th dose independent rect. 7 8
365 50.62 radiation 1.0 720 < th dose independent rect. 19 8
370 50.62 temperature 10.0 720 > th dose independent rect. 3 16
371 50.62 temperature 10.0 720 > th dose independent rect. 15 16
375 50.62 radiation 1.0 720 < th dose dependent rect. 19 8
380 50.63 precipitation 0.1 720 < th dose independent rect. 15 8
381 50.63 precipitation 0.1 720 < th dose dependent rect. 15 8
382 50.64 atmosphere 995.0 720 > th dose independent rect. 7 8
383 50.64 precipitation 0.1 720 < th dose independent rect. 7 8
384 50.64 precipitation 0.1 720 < th dose dependent rect. 7 8
388 50.68 wind 1.0 30 > th dose independent rect. 3 23
392 50.69 wind 1.0 720 > th dose independent rect. 15 8
400 50.71 atmosphere 995.0 720 > th dose independent rect. 15 16
405 50.72 atmosphere 995.0 720 > th dose independent rect. 3 16
407 50.73 wind 3.0 30 < th dose dependent rect. 17 10
413 50.75 wind 5.0 30 < th dose dependent rect. 19 8
418 50.77 temperature 25.0 270 < th dose independent rect. 20 11
421 50.78 precipitation 0.1 720 < th dose independent rect. 23 16
424 50.78 precipitation 0.1 720 < th dose dependent rect. 23 16
425 50.79 precipitation 0.1 720 < th dose independent rect. 11 16
426 50.79 precipitation 0.1 720 < th dose dependent rect. 11 16
427 50.80 atmosphere 1015.0 720 < th dose independent rect. 3 8
440 50.83 temperature 10.0 30 > th dose dependent rect. 3 23
465 50.89 precipitation 0.1 720 < th dose independent rect. 3 16
466 50.89 precipitation 0.1 720 < th dose dependent rect. 3 16
505 50.99 wind 3.0 30 < th dose dependent rect. 10 17
506 51.00 temperature 25.0 270 > th dose independent sin 10 NA
509 51.00 wind 1.0 10 > th dose independent rect. 14 15
514 51.01 temperature 10.0 90 > th dose dependent rect. 19 8
524 51.02 wind 9.0 30 < th dose dependent rect. 15 12
545 51.06 wind 1.0 10 > th dose independent sin 16 NA
549 51.07 temperature 25.0 270 < th dose independent sin 10 NA
559 51.08 wind 9.0 1440 < th dose independent rect. 23 1
560 51.08 temperature 10.0 1440 > th dose independent rect. 23 1
563 51.08 temperature 30.0 1440 < th dose independent rect. 23 1
567 51.08 humidity 50.0 1440 > th dose independent rect. 23 1
577 51.08 atmosphere 995.0 1440 > th dose independent rect. 23 1
578 51.08 radiation 1.0 1440 < th dose independent rect. 23 1
599 51.08 temperature 10.0 1440 > th dose independent rect. 24 23
603 51.08 radiation 1.0 1440 < th dose dependent rect. 23 1
613 51.10 temperature 25.0 30 > th dose independent rect. 22 1
614 51.10 humidity 90.0 30 < th dose independent rect. 22 1
616 51.10 atmosphere 1015.0 720 < th dose independent rect. 3 16
618 51.10 atmosphere 1005.0 30 > th dose dependent rect. 22 1
621 51.11 temperature 25.0 30 > th dose dependent rect. 22 1
628 51.12 atmosphere 1005.0 30 > th dose independent rect. 22 1
661 51.13 humidity 90.0 30 < th dose dependent rect. 22 1
672 51.14 wind 1.0 30 > th dose independent rect. 22 1
676 51.14 precipitation 0.1 30 < th dose independent rect. 22 1
682 51.14 precipitation 0.1 30 < th dose dependent rect. 22 1
685 51.15 wind 3.0 30 < th dose independent rect. 22 1
689 51.15 temperature 10.0 30 > th dose independent rect. 22 1
691 51.15 temperature 30.0 30 < th dose independent rect. 22 1
692 51.15 humidity 50.0 30 > th dose independent rect. 22 1
697 51.15 atmosphere 1010.0 30 < th dose independent rect. 22 1
699 51.15 radiation 1.0 30 < th dose independent rect. 22 1
705 51.15 temperature 10.0 30 > th dose independent rect. 23 23
706 51.15 wind 7.0 30 < th dose dependent rect. 22 1
708 51.15 radiation 1.0 30 < th dose dependent rect. 22 1
718 51.16 wind 5.0 90 < th dose independent rect. 19 8
719 51.16 wind 1.0 30 > th dose dependent rect. 22 1
721 51.16 humidity 50.0 30 > th dose dependent rect. 22 1
722 51.16 temperature 10.0 90 > th dose dependent rect. 3 6
725 51.16 radiation 40.0 90 < th dose dependent rect. 13 14
734 51.17 radiation 40.0 90 < th dose dependent rect. 11 16
736 51.18 precipitation 0.1 720 < th dose independent rect. 15 16
743 51.18 precipitation 0.1 720 < th dose dependent rect. 15 16
749 51.19 wind 9.0 30 < th dose independent rect. 23 23
754 51.19 temperature 10.0 90 > th dose dependent rect. 3 16
757 51.20 wind 9.0 90 < th dose independent rect. 3 16
758 51.20 atmosphere 995.0 90 > th dose independent rect. 3 16
764 51.20 temperature 10.0 90 > th dose dependent rect. 3 18
777 51.21 atmosphere 1015.0 30 < th dose dependent rect. 22 1
780 51.21 atmosphere 995.0 90 > th dose dependent rect. 3 6
787 51.22 temperature 30.0 30 < th dose dependent rect. 22 1
827 51.26 precipitation 0.1 90 < th dose independent rect. 19 8
829 51.26 precipitation 0.1 90 < th dose dependent rect. 19 8
839 51.27 radiation 1.0 90 < th dose dependent rect. 13 14
840 51.27 radiation 1.0 90 < th dose dependent rect. 11 16
845 51.27 wind 9.0 30 < th dose dependent rect. 3 23
849 51.28 temperature 10.0 90 > th dose independent rect. 19 8
850 51.28 temperature 30.0 90 < th dose independent rect. 19 8
851 51.28 humidity 50.0 720 > th dose independent rect. 7 8
852 51.28 humidity 50.0 90 > th dose independent rect. 19 8
854 51.28 atmosphere 995.0 90 > th dose independent rect. 19 8
855 51.28 radiation 1.0 90 < th dose independent rect. 19 8
861 51.28 temperature 10.0 90 > th dose independent rect. 3 16
862 51.28 atmosphere 1015.0 90 < th dose independent rect. 3 16
863 51.28 precipitation 0.1 90 < th dose independent rect. 3 16
868 51.28 radiation 1.0 90 < th dose dependent rect. 19 8
875 51.28 precipitation 0.1 90 < th dose dependent rect. 3 16
887 51.29 radiation 40.0 90 < th dose dependent rect. 15 12
889 51.29 radiation 40.0 90 < th dose dependent rect. 9 18
891 51.30 wind 9.0 90 < th dose independent rect. 3 6
892 51.30 temperature 10.0 90 > th dose independent rect. 3 6
894 51.30 humidity 50.0 90 > th dose independent rect. 3 6
896 51.30 atmosphere 995.0 90 > th dose independent rect. 3 6
897 51.30 atmosphere 1015.0 90 < th dose independent rect. 3 6
900 51.30 temperature 10.0 90 > th dose independent rect. 9 18
901 51.30 radiation 40.0 90 < th dose independent rect. 9 18
902 51.30 precipitation 0.1 90 < th dose independent rect. 9 18
911 51.30 precipitation 0.1 90 < th dose dependent rect. 9 18
916 51.31 precipitation 0.1 90 < th dose independent rect. 3 6
921 51.31 humidity 50.0 720 > th dose independent rect. 23 16
925 51.31 precipitation 0.1 90 < th dose dependent rect. 3 6
934 51.32 temperature 30.0 90 < th dose independent rect. 3 6
935 51.32 radiation 40.0 90 < th dose independent rect. 3 6
937 51.32 wind 1.0 10 > th dose independent rect. 14 19
942 51.32 radiation 1.0 90 < th dose dependent rect. 15 12
953 51.33 wind 1.0 10 > th dose independent rect. 23 11
954 51.33 wind 9.0 720 < th dose independent rect. 15 16
975 51.34 wind 9.0 720 < th dose independent rect. 15 8