BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0637900 Os03g0637900|AK060224
(430 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os03g0637900 Conserved hypothetical protein 846 0.0
Os12g0605100 Conserved hypothetical protein 225 4e-59
Os10g0422000 Conserved hypothetical protein 154 1e-37
Os03g0161100 KIP1-like domain containing protein 128 6e-30
>Os03g0637900 Conserved hypothetical protein
Length = 430
Score = 846 bits (2185), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 417/430 (96%), Positives = 417/430 (96%)
Query: 1 MVQKEVLKEEITRRNSYVDELKDKLNAVEIENRRLKVDLNGDFTVLGSLQNEVSALEKQT 60
MVQKEVLKEEITRRNSYVDELKDKLNAVEIENRRLKVDLNGDFTVLGSLQNEVSALEKQT
Sbjct: 1 MVQKEVLKEEITRRNSYVDELKDKLNAVEIENRRLKVDLNGDFTVLGSLQNEVSALEKQT 60
Query: 61 LSLANDCLQSNKLRMEENALSTQVLKTNMRSSGDQNTVRTVKDMELQKLHGTIKALQKVV 120
LSLANDCLQSNKLRMEENALSTQVLKTNMRSSGDQNTVRTVKDMELQKLHGTIKALQKVV
Sbjct: 61 LSLANDCLQSNKLRMEENALSTQVLKTNMRSSGDQNTVRTVKDMELQKLHGTIKALQKVV 120
Query: 121 TDTAVLLDQERLDFNANLQEARKQIEVXXXXXXXXXXXXXMNYEQMLKDIQLDLIQISSG 180
TDTAVLLDQERLDFNANLQEARKQIEV MNYEQMLKDIQLDLIQISSG
Sbjct: 121 TDTAVLLDQERLDFNANLQEARKQIEVLKLKEILDDDLIEMNYEQMLKDIQLDLIQISSG 180
Query: 181 NKTGSLGQANKTVAQANEKMLDSHGIVGASSSHVRNDLRPPQSESFERDNYKRPPSELMV 240
NKTGSLGQANKTVAQANEKMLDSHGIVGASSSHVRNDLRPPQSESFERDNYKRPPSELMV
Sbjct: 181 NKTGSLGQANKTVAQANEKMLDSHGIVGASSSHVRNDLRPPQSESFERDNYKRPPSELMV 240
Query: 241 VKELSIDKQELPRSITTEPHQEWKNKVIERLASDAQRLNALQSSIQELKTNTEASEGLEL 300
VKELSIDKQELPRSITTEPHQEWKNKVIERLASDAQRLNALQSSIQELKTNTEASEGLEL
Sbjct: 241 VKELSIDKQELPRSITTEPHQEWKNKVIERLASDAQRLNALQSSIQELKTNTEASEGLEL 300
Query: 301 ESVRYQIREAEGFITQLIDSNGKLSKKAEEFTSEDGLDGDNIDLRSRHQRKIMERARKMA 360
ESVRYQIREAEGFITQLIDSNGKLSKKAEEFTSEDGLDGDNIDLRSRHQRKIMERARKMA
Sbjct: 301 ESVRYQIREAEGFITQLIDSNGKLSKKAEEFTSEDGLDGDNIDLRSRHQRKIMERARKMA 360
Query: 361 EKIGRLEVEMQKVQEALLKYEEQTSTRTSKTMHRRSKVQLVDFLYGRRRDSRKQQRCSPC 420
EKIGRLEVEMQKVQEALLKYEEQTSTRTSKTMHRRSKVQLVDFLYGRRRDSRKQQRCSPC
Sbjct: 361 EKIGRLEVEMQKVQEALLKYEEQTSTRTSKTMHRRSKVQLVDFLYGRRRDSRKQQRCSPC 420
Query: 421 GCMKANAIDD 430
GCMKANAIDD
Sbjct: 421 GCMKANAIDD 430
>Os12g0605100 Conserved hypothetical protein
Length = 472
Score = 225 bits (574), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 120/190 (63%), Positives = 143/190 (75%), Gaps = 11/190 (5%)
Query: 1 MVQKEVLKEEITRRNSYVDELKDKLNAVEIENRRLKVDLNGDFTVLGSLQNEVSALEKQT 60
MVQKEVLKEEITRRNSYV+ LKDKLNAVEIEN RLKVDLNGDFT+LG+LQ EVSALEKQT
Sbjct: 106 MVQKEVLKEEITRRNSYVNALKDKLNAVEIENSRLKVDLNGDFTLLGALQTEVSALEKQT 165
Query: 61 LSLANDCLQSNKLRMEENALSTQVLKTNMRS-SGDQNTVRTVKDMELQKLHGTIKALQKV 119
+SLA DCL SNKLRMEE ++S Q+ K ++ G+ N + VKDMEL+KLHGTIKALQKV
Sbjct: 166 MSLAKDCLPSNKLRMEEFSVSPQLSKIAVKPIHGEPNATKMVKDMELEKLHGTIKALQKV 225
Query: 120 VTDTAVLLDQERLDFNANLQEARKQIEV----------XXXXXXXXXXXXXMNYEQMLKD 169
VTDT V+L+QERLDFNANL +AR+QI++ ++LKD
Sbjct: 226 VTDTGVVLEQERLDFNANLLDARRQIDLLRLRDDMAAAVDDSDAASDPAAAAYDRRLLKD 285
Query: 170 IQLDLIQISS 179
IQLDL+Q ++
Sbjct: 286 IQLDLVQTTT 295
>Os10g0422000 Conserved hypothetical protein
Length = 420
Score = 154 bits (388), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 133/428 (31%), Positives = 210/428 (49%), Gaps = 45/428 (10%)
Query: 31 ENRRLKVDLNGDFTVLGSLQNEVSALEKQTLSLANDCLQSNKLRMEENALSTQVLKTNMR 90
EN LK +L+ ++ SL + V+ LE+ TLSL S E +V R
Sbjct: 1 ENTELKANLSTHVALIASLSDHVNELEENTLSL------SKPYSTESKKEDAEVPFMQER 54
Query: 91 SSGDQNTVRTVKDMELQKLHGTIKALQKVVTDTAVLLDQERLDFNANLQEARKQIEVXXX 150
+ G ++ ELQ+L + ALQ + + L DQE A L A + I+
Sbjct: 55 NHGPESHPLPEGTPELQRLIARMGALQVAIRNAKDLHDQESTKSAATLAAAHRDIQELKA 114
Query: 151 XXXXXXXXXXM--------NYE-------QMLKDIQLDLIQISSGNKTGSLGQANKTVAQ 195
+ N E QM+KDI+LD I TG+ K A
Sbjct: 115 RGGSQMEAREIYSDNEKLNNVEGSKGKQVQMMKDIELDQISTCPPYGTGAALYPLKNGAN 174
Query: 196 A--NEKMLDSHGIVGASSSHVRNDLRPPQS-----ESFERDNYKRPPSELMVVKELSIDK 248
A +++ML + A+ +N S E+ E + P SEL ++L I+K
Sbjct: 175 AGMDDEMLQ---LWEAAERSCKNQTSKSSSAEHDIEAVEEVKSEYPSSELARGRDLGINK 231
Query: 249 QELPRSITTEPHQEWKNKVIERLASDAQRLNALQSSIQELK------TNTEASEGLELES 302
E+ S + EPH++W N V+E+L+SDAQRL ++Q SI+ELK +N ++ E +
Sbjct: 232 LEVSTS-SVEPHEQWSNNVLEKLSSDAQRLQSIQVSIKELKRKMGSPSNGKSPMNSEYNT 290
Query: 303 VRYQIREAEGFITQLIDSNGKLSKKAEEFTS-EDGLDGDNIDLRSRHQRKIMERARKMAE 361
V Q+ + EG + + I+ N KL+K+ E + + D ++ + SR RKI + +K +E
Sbjct: 291 VSTQLLDTEGCVLEQINYNNKLTKRVENYPALSDSMNAEQEGYPSR--RKISGQVQKGSE 348
Query: 362 KIGRLEVEMQKVQEALLKYEEQTSTRTSKTMHRRSKVQLVDFLYGRRRD----SRKQQRC 417
+GRLE+E+QK+Q LLK EE+ R K +R++V L D+LYGR+ +K++R
Sbjct: 349 NVGRLELELQKIQYVLLKLEEEHEYRRLKVSDKRTRVLLRDYLYGRKEKRGGAQKKKKRA 408
Query: 418 SPCGCMKA 425
CGC+++
Sbjct: 409 PFCGCVQS 416
>Os03g0161100 KIP1-like domain containing protein
Length = 2753
Score = 128 bits (322), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 130/462 (28%), Positives = 227/462 (49%), Gaps = 64/462 (13%)
Query: 1 MVQKEVLKEEITRRNSYVDELKDKLNAVEIENRRLKVDLNGDFTVLGSLQNEVSALEKQT 60
+K++L +EI+ R++YVD+L+ ++ ++ EN L +L ++ SL +++ ALE+
Sbjct: 2275 FTEKDMLMKEISSRDAYVDDLQKRVASMRGENAGLMAELAAYLPLVASLSDQIRALEE-- 2332
Query: 61 LSLANDCLQSNKLRMEENALSTQVLKTNMRSSGDQNTVRTVKDMELQKLHGTIKALQKVV 120
L + L ++L E Q + S D + ++L+ L ++AL V+
Sbjct: 2333 --LEDGTLLLSELNKEGKLEFVQKDRHVPESQDDSSGA-----LKLRSLIARVEALHVVI 2385
Query: 121 TDTAVLLDQERLDFNANLQEARKQIE--------------VXXXXXXXXXXXXXMNYEQM 166
D D+E + A L+ A +I+ + Q+
Sbjct: 2386 LDAKGRRDKEFTESVAQLEAANMEIQELKARKGSNAKEECTEDDRQKYDADNSKGKHVQI 2445
Query: 167 LKDIQLDLIQISSGNKTGSL-----GQANKTVAQANEKMLDSHGIV-------GASSSHV 214
+KDI+LD + + TG+ G AN + +++ML A SS
Sbjct: 2446 MKDIELDQVSTCALYGTGATIYPLGGDAN---VELDDEMLQLWETAERDCKNQTAKSSSS 2502
Query: 215 RNDLRPPQSESFERDNYKRPPSELMVVKELSIDKQELPRSITTEPHQEWKNKVIERLASD 274
ND+ ++ E + P EL ++ ID+ E+ +++ EP Q W V+++LASD
Sbjct: 2503 ENDI-----QAVEEVKSEYPSFELARGRDPGIDRLEIS-AVSLEPQQLWSKNVLDKLASD 2556
Query: 275 AQRLNALQSSIQELKTN-TEASEG-----LELESVRYQIREAEGFITQLIDSNGKLSKKA 328
AQRL+ +Q+SI+E+K AS+G E S+R Q++E +G + + ID N ++KKA
Sbjct: 2557 AQRLSIVQASIEEIKQKMVGASKGKSTVSSEYSSIRAQLQEIDGSVLEQIDFNCNVTKKA 2616
Query: 329 EEFTSED---GLDGDNIDLRSRHQRKIMERARKMAEKIGRLEVEMQKVQEALLKYEEQTS 385
E + + + L+G SR RKI E+ +K +EK+ +LE+E+QK+Q LLK EE+
Sbjct: 2617 ENYPAFEVSAELEG----YSSR--RKISEQVQKGSEKVAKLELELQKIQYVLLKLEEEHE 2670
Query: 386 TRTSKTMHRRSKVQLVDFLYGRRRDS-----RKQQRCSPCGC 422
+ K +RS+V L D++ R+ + K++R CGC
Sbjct: 2671 YKRVKAPEKRSRVLLRDYMTARKDKNDAGQKTKKKRIPFCGC 2712
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.311 0.127 0.333
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 11,495,987
Number of extensions: 413493
Number of successful extensions: 1657
Number of sequences better than 1.0e-10: 4
Number of HSP's gapped: 1649
Number of HSP's successfully gapped: 4
Length of query: 430
Length of database: 17,035,801
Length adjustment: 104
Effective length of query: 326
Effective length of database: 11,605,545
Effective search space: 3783407670
Effective search space used: 3783407670
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 157 (65.1 bits)