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Os10g0422000

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 10.7 (0.0164) R2 : 0.594
β1 : 0.819 (0.06) R2dD : 0.172 R2D : 0.0709
β2 : 0.838 (0.0426) R2dC : 0.346 R2C : 0.324
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.396 (0.035) R2dN8 : 0.153 R2N8 : 0.0705
σ : 0.308
deviance : 43.3
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_____
C
peak time of C : 6.76
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
30.45 0.259 10.6 1.35 0.623 -0.913 -0.196 1.87 0.631 8.02 20.17 198 -- --
32.83 0.267 10.6 1.04 0.623 -0.983 -0.322 -- 0.534 7.59 11.26 262 -- --
30.55 0.257 10.6 1.35 0.619 -0.901 -- 1.9 0.633 7.94 20.01 217 -- --
33.08 0.268 10.6 1.03 0.639 -0.987 -- -- 0.536 7.85 14.81 211 -- --
43.42 0.307 10.6 1.61 -- -1.28 -- 2.67 0.745 -- 21.08 424 -- --
43.13 0.308 10.7 0.823 0.839 -- -0.254 -- 0.395 6.75 -- -- -- --
43.3 0.308 10.7 0.819 0.838 -- -- -- 0.396 6.76 -- -- -- --
47.81 0.322 10.6 1.15 -- -1.34 -- -- 0.617 -- 16.25 425 -- --
58.19 0.355 10.7 -- 0.743 -0.505 -- -- 0.359 7.19 13.13 173 -- --
80.03 0.418 10.7 0.838 -- -- -- -- 0.412 -- -- -- -- --
60.99 0.365 10.7 -- 0.848 -- -- -- 0.304 6.7 -- -- -- --
76.1 0.406 10.7 -- -- -0.868 -- -- 0.393 -- 24.1 372 -- --
98.56 0.463 10.7 -- -- -- -- -- 0.319 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 29.59 temperature 20 270 > th dose dependent sin 3 NA
2 29.59 temperature 20 270 > th dose dependent rect. 20 22
6 29.80 temperature 10 270 > th dose dependent rect. 6 23
7 29.83 temperature 20 720 > th dose dependent rect. 22 15
8 29.83 temperature 30 270 < th dose dependent rect. 1 22
24 29.96 temperature 20 270 > th dose dependent rect. 17 23
41 30.07 temperature 20 90 > th dose dependent rect. 23 23
97 30.37 temperature 20 90 > th dose dependent rect. 1 17
102 30.38 temperature 30 270 < th dose dependent rect. 3 18
110 30.40 temperature 30 270 < th dose dependent rect. 22 23
115 30.43 temperature 30 270 < th dose dependent rect. 3 14
161 30.61 temperature 20 270 > th dose dependent no NA NA
233 30.82 temperature 30 270 < th dose dependent sin 1 NA
282 30.99 temperature 15 270 > th dose dependent rect. 7 11
425 31.32 temperature 30 270 < th dose dependent no NA NA
438 31.34 temperature 30 720 < th dose dependent rect. 23 17
534 31.51 temperature 10 720 > th dose dependent rect. 6 7
566 31.57 radiation 1 14400 > th dose independent rect. 18 11
581 31.60 temperature 30 270 < th dose dependent rect. 15 23
597 31.64 temperature 15 720 > th dose dependent rect. 6 5
608 31.67 radiation 1 14400 > th dose independent rect. 18 1
658 31.72 temperature 30 270 < th dose dependent rect. 13 23
715 31.80 temperature 20 1440 > th dose dependent rect. 17 4
748 31.85 temperature 20 1440 > th dose dependent rect. 16 8
819 31.94 temperature 20 1440 > th dose dependent rect. 18 1
838 31.96 temperature 20 1440 > th dose dependent sin 15 NA
871 31.99 temperature 30 1440 < th dose dependent rect. 15 15
882 32.00 temperature 30 1440 < th dose dependent rect. 16 13
909 32.02 temperature 30 270 < th dose dependent rect. 8 23
926 32.04 temperature 30 1440 < th dose dependent rect. 17 7
932 32.04 temperature 30 270 < th dose dependent rect. 10 23
934 32.05 temperature 30 1440 < th dose dependent sin 14 NA