Os03g0637900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os03g0637900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 219.35 | 0.696 | 7.91 | -3.78 | 0.977 | 2.1 | 1.54 | -3.54 | -0.11 | 7.01 | 25.74 | 1274 | -- | -- |
| 223.03 | 0.696 | 7.8 | -2.85 | 0.977 | 1.75 | 1.58 | -- | 0.107 | 7.12 | 25.67 | 1263 | -- | -- |
| 225.34 | 0.699 | 7.91 | -3.71 | 0.99 | 2.11 | -- | -3.38 | -0.131 | 7.13 | 25.6 | 1267 | -- | -- |
| 229.17 | 0.705 | 7.8 | -2.85 | 0.968 | 1.77 | -- | -- | 0.0856 | 7.25 | 25.62 | 1265 | -- | -- |
| 274.2 | 0.771 | 7.94 | -3.68 | -- | 2.13 | -- | -3 | -0.186 | -- | 24.9 | 1319 | -- | -- |
| 341.84 | 0.867 | 7.77 | -2.31 | 1.03 | -- | 1.98 | -- | 0.238 | 5.98 | -- | -- | -- | -- |
| 351.35 | 0.878 | 7.77 | -2.29 | 1.04 | -- | -- | -- | 0.231 | 6.14 | -- | -- | -- | -- |
| 277.26 | 0.776 | 7.82 | -2.82 | -- | 1.75 | -- | -- | 0.0929 | -- | 25.38 | 1323 | -- | -- |
| 424.77 | 0.96 | 7.69 | -- | 0.931 | 1.11 | -- | -- | 0.6 | 7.04 | 28.5 | 1240 | -- | -- |
| 407.06 | 0.943 | 7.79 | -2.26 | -- | -- | -- | -- | 0.254 | -- | -- | -- | -- | -- |
| 489.49 | 1.03 | 7.71 | -- | 1 | -- | -- | -- | 0.486 | 6.26 | -- | -- | -- | -- |
| 472.93 | 1.01 | 7.7 | -- | -- | 1.16 | -- | -- | 0.657 | -- | 28.5 | 1282 | -- | -- |
| 541.81 | 1.09 | 7.73 | -- | -- | -- | -- | -- | 0.505 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 219.98 | temperature | 25 | 1440 | > th | dose dependent | rect. | 13 | 1 |
| 2 | 221.04 | temperature | 25 | 1440 | > th | dose dependent | rect. | 13 | 4 |
| 7 | 221.94 | temperature | 25 | 1440 | > th | dose dependent | rect. | 13 | 11 |
| 22 | 222.22 | temperature | 25 | 1440 | > th | dose dependent | rect. | 12 | 20 |
| 56 | 222.82 | temperature | 25 | 1440 | > th | dose dependent | rect. | 15 | 2 |
| 59 | 222.91 | temperature | 25 | 1440 | > th | dose dependent | sin | 18 | NA |
| 132 | 224.80 | temperature | 25 | 1440 | > th | dose dependent | rect. | 6 | 18 |
| 141 | 224.82 | temperature | 25 | 1440 | > th | dose dependent | rect. | 21 | 22 |
| 167 | 224.95 | temperature | 25 | 1440 | > th | dose dependent | no | NA | NA |
| 177 | 224.99 | temperature | 25 | 1440 | > th | dose dependent | rect. | 18 | 23 |
| 185 | 225.06 | temperature | 25 | 1440 | > th | dose dependent | rect. | 23 | 23 |
| 263 | 225.97 | temperature | 25 | 1440 | > th | dose dependent | rect. | 15 | 23 |
| 289 | 226.98 | radiation | 40 | 1440 | < th | dose dependent | rect. | 16 | 14 |
| 290 | 227.01 | radiation | 40 | 1440 | < th | dose dependent | rect. | 16 | 12 |
| 298 | 227.20 | radiation | 40 | 1440 | < th | dose dependent | rect. | 16 | 4 |
| 311 | 227.40 | radiation | 30 | 1440 | < th | dose dependent | rect. | 16 | 8 |
| 323 | 227.54 | wind | 5 | 43200 | > th | dose independent | rect. | 20 | 1 |
| 328 | 227.67 | wind | 5 | 43200 | < th | dose independent | rect. | 20 | 1 |
| 357 | 228.61 | radiation | 1 | 1440 | > th | dose dependent | rect. | 16 | 2 |
| 374 | 229.07 | radiation | 1 | 1440 | > th | dose dependent | rect. | 16 | 14 |
| 379 | 229.26 | humidity | 70 | 14400 | > th | dose independent | rect. | 19 | 12 |
| 386 | 229.61 | humidity | 70 | 14400 | < th | dose independent | rect. | 19 | 12 |
| 400 | 229.88 | humidity | 70 | 14400 | < th | dose independent | rect. | 19 | 1 |
| 430 | 230.32 | radiation | 10 | 1440 | > th | dose independent | rect. | 15 | 15 |
| 433 | 230.42 | radiation | 10 | 1440 | > th | dose independent | sin | 14 | NA |
| 434 | 230.43 | humidity | 70 | 14400 | > th | dose independent | rect. | 19 | 5 |
| 435 | 230.43 | humidity | 70 | 14400 | > th | dose independent | rect. | 19 | 10 |
| 444 | 230.55 | temperature | 25 | 720 | > th | dose dependent | rect. | 18 | 15 |
| 452 | 230.62 | radiation | 10 | 1440 | > th | dose independent | rect. | 15 | 3 |
| 483 | 230.85 | temperature | 30 | 1440 | < th | dose independent | rect. | 11 | 20 |
| 486 | 230.87 | temperature | 30 | 1440 | < th | dose independent | rect. | 11 | 18 |
| 489 | 230.90 | temperature | 30 | 1440 | < th | dose independent | rect. | 11 | 16 |
| 495 | 230.97 | temperature | 30 | 1440 | < th | dose independent | rect. | 11 | 14 |
| 496 | 230.98 | temperature | 30 | 1440 | < th | dose independent | rect. | 11 | 9 |
| 499 | 230.99 | temperature | 30 | 1440 | < th | dose independent | rect. | 11 | 11 |
| 510 | 231.10 | humidity | 70 | 14400 | > th | dose independent | rect. | 19 | 1 |
| 525 | 231.29 | radiation | 20 | 14400 | > th | dose dependent | rect. | 16 | 15 |
| 534 | 231.37 | radiation | 1 | 1440 | < th | dose independent | rect. | 8 | 22 |
| 537 | 231.46 | temperature | 30 | 1440 | < th | dose independent | sin | 17 | NA |
| 549 | 231.70 | humidity | 70 | 14400 | < th | dose independent | rect. | 19 | 3 |
| 593 | 232.05 | temperature | 30 | 14400 | < th | dose independent | rect. | 11 | 2 |
| 608 | 232.21 | radiation | 10 | 1440 | < th | dose dependent | sin | 15 | NA |
| 623 | 232.24 | temperature | 30 | 14400 | > th | dose dependent | rect. | 16 | 3 |
| 637 | 232.27 | temperature | 30 | 14400 | > th | dose independent | rect. | 11 | 2 |
| 638 | 232.28 | humidity | 90 | 43200 | > th | dose dependent | rect. | 10 | 1 |
| 647 | 232.43 | radiation | 1 | 1440 | > th | dose independent | rect. | 8 | 22 |
| 652 | 232.56 | temperature | 30 | 1440 | > th | dose independent | rect. | 11 | 8 |
| 677 | 232.59 | humidity | 70 | 14400 | < th | dose dependent | rect. | 18 | 1 |
| 678 | 232.61 | temperature | 30 | 1440 | > th | dose independent | sin | 16 | NA |
| 704 | 232.86 | temperature | 30 | 1440 | < th | dose independent | rect. | 23 | 21 |
| 708 | 232.87 | temperature | 30 | 1440 | < th | dose independent | rect. | 21 | 23 |
| 709 | 232.87 | temperature | 30 | 1440 | < th | dose independent | rect. | 23 | 23 |
| 717 | 232.88 | temperature | 30 | 1440 | < th | dose independent | rect. | 2 | 23 |
| 718 | 232.88 | temperature | 30 | 1440 | < th | dose independent | rect. | 6 | 23 |
| 720 | 232.89 | temperature | 30 | 1440 | < th | dose independent | no | NA | NA |
| 721 | 232.89 | temperature | 30 | 1440 | < th | dose independent | rect. | 2 | 18 |
| 723 | 232.89 | temperature | 30 | 1440 | < th | dose independent | rect. | 4 | 23 |
| 730 | 232.90 | temperature | 30 | 1440 | < th | dose independent | rect. | 6 | 21 |
| 748 | 232.92 | temperature | 30 | 14400 | > th | dose independent | rect. | 16 | 3 |
| 774 | 232.94 | temperature | 30 | 14400 | < th | dose independent | rect. | 16 | 11 |
| 775 | 232.94 | temperature | 30 | 14400 | < th | dose independent | rect. | 16 | 13 |
| 796 | 232.95 | temperature | 30 | 14400 | < th | dose independent | rect. | 16 | 15 |
| 800 | 232.96 | temperature | 30 | 1440 | < th | dose independent | rect. | 6 | 14 |
| 802 | 232.96 | temperature | 30 | 1440 | < th | dose independent | rect. | 4 | 16 |
| 818 | 232.97 | temperature | 30 | 1440 | < th | dose independent | rect. | 17 | 23 |
| 820 | 232.98 | temperature | 30 | 14400 | < th | dose independent | rect. | 16 | 9 |
| 830 | 232.99 | temperature | 30 | 14400 | < th | dose independent | rect. | 16 | 4 |
| 884 | 233.07 | temperature | 30 | 1440 | < th | dose independent | rect. | 15 | 23 |
| 907 | 233.16 | temperature | 30 | 14400 | > th | dose dependent | sin | 13 | NA |
| 922 | 233.16 | radiation | 1 | 1440 | < th | dose dependent | rect. | 8 | 22 |
| 933 | 233.25 | temperature | 30 | 1440 | < th | dose independent | rect. | 13 | 23 |
| 945 | 233.33 | wind | 5 | 43200 | > th | dose independent | rect. | 11 | 1 |
| 984 | 233.59 | temperature | 30 | 1440 | < th | dose independent | rect. | 15 | 16 |
| 985 | 233.61 | temperature | 30 | 1440 | < th | dose independent | rect. | 15 | 14 |