BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0637900 Os03g0637900|AK060224
(430 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G03080.1 | chr1:731794-737332 REVERSE LENGTH=1734 90 2e-18
AT4G02710.1 | chr4:1193516-1197061 REVERSE LENGTH=1112 85 9e-17
AT4G14760.1 | chr4:8475718-8481094 FORWARD LENGTH=1711 76 4e-14
AT3G22790.1 | chr3:8052446-8057888 REVERSE LENGTH=1729 74 2e-13
>AT1G03080.1 | chr1:731794-737332 REVERSE LENGTH=1734
Length = 1733
Score = 90.1 bits (222), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 77/237 (32%), Positives = 124/237 (52%), Gaps = 23/237 (9%)
Query: 203 SHGIVGASSSHVRNDLRPPQSESFERDNYKRPPSELMVVKELSIDKQELPRSITTEPHQE 262
S+GI R+ L+ S E + P + + + L +DK E+ T
Sbjct: 1500 SYGI------STRDILKIEDDHSLEAKSQNPPKGKSLSEESLVVDKLEISDRFTDPNKDA 1553
Query: 263 WKNKVIERLASDAQRLNALQSSIQELKTNTEASEG------LELESVRYQIREAEGFITQ 316
K KV+ERL SD Q+L+ L ++++LK E E E E+++ QI EAE + +
Sbjct: 1554 NKRKVLERLNSDLQKLSNLHVAVEDLKIKVETEEKDEKGKENEYETIKGQINEAEEALEK 1613
Query: 317 LIDSNGKLSKKAEE-FTSEDGLDGDNIDL---RSRHQRKIMERARKMAEKIGRLEVEMQK 372
L+ N KL K + F DG ++DL S +R+I E+AR+ +EKIGRL++E+Q+
Sbjct: 1614 LLSINRKLVTKVQNGFERSDG-SKSSMDLDENESSRRRRISEQARRGSEKIGRLQLEIQR 1672
Query: 373 VQEALLKYEEQTSTRT-SKTMHRRSKVQLVDFLY----GRRRDSRKQQRCSPCGCMK 424
+Q LLK E R +K ++++ L D++Y G RR R ++R + CGC++
Sbjct: 1673 LQFLLLKLEGDREDRAKAKISDSKTRILLRDYIYSGVRGERR-KRIKKRFAFCGCVQ 1728
>AT4G02710.1 | chr4:1193516-1197061 REVERSE LENGTH=1112
Length = 1111
Score = 84.7 bits (208), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 84/273 (30%), Positives = 137/273 (50%), Gaps = 52/273 (19%)
Query: 164 EQMLKDIQLDLIQISSGNKTGSLGQANKTVAQANEKMLDSHGIVGASSSHVRNDLRPPQS 223
E ++KDI LD Q S G+ + + V++ LD G V +L+P ++
Sbjct: 874 EMVMKDIVLD--QTSDGS-------SYEIVSKKGNSELDHLGFV---------ELKPVKT 915
Query: 224 ESFERDNYKRPPSELMVVKELSIDKQELPRSITTEPHQEW-KNKVIERLASDAQRLNALQ 282
E K E ++V+++ I + +P++E K +V+ERL SD Q+L LQ
Sbjct: 916 HKTE---TKALSEESLIVEKVEIFDGFM------DPNREVNKRRVLERLDSDLQKLENLQ 966
Query: 283 SSIQELKTNTEASEGL-------ELESVRYQIREAEGFITQLIDSNGKLSKKAEEFTSED 335
++++LK+ E E E ++++ Q+ E E I +L N KL+ KAE SE
Sbjct: 967 ITVEDLKSKVETVEKEKTKVGENEYKTIKGQLEEGEEAIEKLFTVNRKLTTKAE---SEK 1023
Query: 336 GLDGDNIDLRSRHQRKIMERARKMAEKIGRLEVEMQKVQEALLKYEEQTSTRTSKTMHRR 395
+D +R+I E AR+ EKIGRL+ E+Q++Q L+K E + R +
Sbjct: 1024 DID---------RRRRIFEHARRGTEKIGRLQSEIQRIQFLLMKLEGEREHRLRSKI-SD 1073
Query: 396 SKVQLVDFLYGRRRD----SRKQQRCSPCGCMK 424
+KV L D++YGR R R ++R CGC++
Sbjct: 1074 TKVLLRDYIYGRTRSVSMKKRTKKRSVFCGCVQ 1106
>AT4G14760.1 | chr4:8475718-8481094 FORWARD LENGTH=1711
Length = 1710
Score = 75.9 bits (185), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 61/189 (32%), Positives = 113/189 (59%), Gaps = 25/189 (13%)
Query: 246 IDKQELPRSITTEPHQEWKNKVIERLASDAQRLNALQSSIQELKTNTEASE------GLE 299
+DK EL R+I E K K++ERL SD++RL++L+ S+ +LK E +E +
Sbjct: 1535 VDKLELSRNI------EDKAKILERLLSDSRRLSSLRISLTDLKRKLEMNEKQRRFSNAD 1588
Query: 300 LESVRYQIREAEGFITQLIDSNGKLSKKAEEFTSEDGLDGDNIDLRSRHQRKIMERARKM 359
L V+ Q++E E ++QL ++N LSK+ EE GD D+ +++ ++E++R
Sbjct: 1589 LVIVKRQLKEMEEAVSQLENTNEILSKEIEE-------TGDARDI---YRKVVVEKSRSG 1638
Query: 360 AEKIGRLEVEMQKVQEALLKYEEQTSTRTSKTMHR-RSKVQLVDFLY-GRRRDSRKQQRC 417
+EKI +L+ +MQ +++ +LK E+ T ++ K R+ + L D ++ G +R +RK++
Sbjct: 1639 SEKIEQLQNKMQNIEQTVLKLEDGTKSKGRKMFSETRTVILLRDIIHKGGKRSARKKKN- 1697
Query: 418 SPCGCMKAN 426
CGC++++
Sbjct: 1698 RFCGCIRSS 1706
>AT3G22790.1 | chr3:8052446-8057888 REVERSE LENGTH=1729
Length = 1728
Score = 73.6 bits (179), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 61/191 (31%), Positives = 105/191 (54%), Gaps = 26/191 (13%)
Query: 246 IDKQELPRSITTEPHQEWKNKVIERLASDAQRLNALQSSIQELKTNTEASE------GLE 299
+DK EL RS E K++ERL SD++RL +L+ S+++LK+ E +E +
Sbjct: 1552 VDKLELSRST------EDNAKILERLLSDSRRLASLRISLRDLKSKLEINEKPGKFTNPD 1605
Query: 300 LESVRYQIREAEGFITQLIDSNGKLSKKAEEFTSEDGLDGDNIDLRSRHQRKIMERARKM 359
VR Q++E E I QL ++N LS + EE D+R +++ +ME++R
Sbjct: 1606 FARVRKQMKEMEEAIFQLANTNEILSNEIEETG----------DVRDIYRKVVMEKSRIG 1655
Query: 360 AEKIGRLEVEMQKVQEALLKYEEQTSTRTS--KTMHRRSKVQLVDFLY-GRRRDSRKQQR 416
+EKI +++ EMQ ++ +LK EE + K R+ + L D ++ G +R +RK++
Sbjct: 1656 SEKIEQMQQEMQNIERTVLKLEEGATKSKGRRKFSESRTVILLRDIIHKGGKRTARKKKN 1715
Query: 417 CSPCGCMKANA 427
CGCM+++
Sbjct: 1716 -RFCGCMRSSG 1725
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.311 0.127 0.333
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 7,790,791
Number of extensions: 296999
Number of successful extensions: 1432
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 1429
Number of HSP's successfully gapped: 7
Length of query: 430
Length of database: 11,106,569
Length adjustment: 101
Effective length of query: 329
Effective length of database: 8,337,553
Effective search space: 2743054937
Effective search space used: 2743054937
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 113 (48.1 bits)