Os12g0605100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
FiT-DB / Search/ Help/ Sample detail
|
Os12g0605100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
|
Description : Conserved hypothetical protein.
|
|
log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
|
_____ |
|
__
Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 165.85 | 0.605 | 4.18 | -1.41 | 0.125 | 0.71 | 1.3 | 3.04 | 0.0495 | 0.97 | 30.8 | 1326 | -- | -- |
| 166.33 | 0.601 | 4.24 | -1.93 | 0.117 | 1.06 | 1.28 | -- | 0.0629 | 1.22 | 31.3 | 1327 | -- | -- |
| 172.69 | 0.612 | 4.18 | -1.4 | 0.106 | 0.712 | -- | 3.44 | 0.0408 | 1.84 | 30.8 | 1260 | -- | -- |
| 173.27 | 0.613 | 4.25 | -2.02 | 0.11 | 1.08 | -- | -- | 0.0439 | 1.48 | 31.3 | 1285 | -- | -- |
| 173.28 | 0.613 | 4.17 | -1.33 | -- | 0.679 | -- | 3.89 | 0.0464 | -- | 30.9 | 1213 | -- | -- |
| 224.87 | 0.703 | 4.3 | -1.67 | 0.271 | -- | 1.56 | -- | -0.176 | 1.43 | -- | -- | -- | -- |
| 234.58 | 0.717 | 4.3 | -1.72 | 0.276 | -- | -- | -- | -0.185 | 2.03 | -- | -- | -- | -- |
| 174.01 | 0.614 | 4.25 | -2.03 | -- | 1.11 | -- | -- | 0.0503 | -- | 31.27 | 1270 | -- | -- |
| 277.46 | 0.776 | 4.21 | -- | 0.115 | 0.823 | -- | -- | 0.204 | 1.27 | 30.8 | 1191 | -- | -- |
| 239.16 | 0.723 | 4.3 | -1.71 | -- | -- | -- | -- | -0.179 | -- | -- | -- | -- | -- |
| 312.85 | 0.827 | 4.26 | -- | 0.244 | -- | -- | -- | 0.00644 | 1.86 | -- | -- | -- | -- |
| 278.05 | 0.777 | 4.21 | -- | -- | 0.853 | -- | -- | 0.208 | -- | 30.89 | 1186 | -- | -- |
| 316.45 | 0.83 | 4.25 | -- | -- | -- | -- | -- | 0.0109 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
|
Histogram 
|
Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 164.71 | radiation | 20 | 1440 | > th | dose dependent | rect. | 15 | 17 |
| 2 | 166.15 | temperature | 30 | 1440 | > th | dose dependent | rect. | 13 | 1 |
| 3 | 166.27 | radiation | 30 | 1440 | < th | dose independent | rect. | 15 | 17 |
| 7 | 166.70 | radiation | 30 | 1440 | > th | dose independent | rect. | 15 | 17 |
| 14 | 167.03 | temperature | 30 | 1440 | < th | dose independent | rect. | 16 | 21 |
| 20 | 167.17 | temperature | 30 | 1440 | > th | dose independent | rect. | 16 | 21 |
| 22 | 167.20 | temperature | 30 | 1440 | > th | dose independent | rect. | 16 | 2 |
| 23 | 167.21 | radiation | 1 | 1440 | > th | dose dependent | rect. | 15 | 17 |
| 24 | 167.22 | temperature | 30 | 1440 | > th | dose dependent | rect. | 18 | 21 |
| 29 | 167.26 | radiation | 40 | 1440 | < th | dose dependent | rect. | 15 | 17 |
| 32 | 167.31 | temperature | 30 | 1440 | < th | dose independent | rect. | 16 | 1 |
| 66 | 167.36 | temperature | 30 | 1440 | > th | dose dependent | sin | 0 | NA |
| 136 | 167.44 | temperature | 30 | 1440 | < th | dose independent | rect. | 16 | 8 |
| 137 | 167.44 | temperature | 30 | 1440 | < th | dose independent | rect. | 16 | 11 |
| 161 | 167.47 | temperature | 30 | 1440 | < th | dose independent | rect. | 16 | 4 |
| 191 | 167.54 | temperature | 30 | 1440 | > th | dose dependent | no | NA | NA |
| 309 | 167.65 | radiation | 30 | 1440 | < th | dose independent | rect. | 15 | 13 |
| 316 | 167.78 | radiation | 30 | 1440 | < th | dose independent | rect. | 15 | 10 |
| 317 | 167.79 | radiation | 30 | 1440 | < th | dose independent | rect. | 15 | 1 |
| 342 | 167.86 | radiation | 30 | 1440 | < th | dose independent | rect. | 15 | 3 |
| 358 | 167.90 | radiation | 1 | 1440 | > th | dose dependent | rect. | 16 | 15 |
| 374 | 168.01 | radiation | 30 | 1440 | < th | dose independent | rect. | 15 | 5 |
| 382 | 168.05 | temperature | 30 | 1440 | > th | dose independent | rect. | 11 | 2 |
| 393 | 168.14 | temperature | 30 | 1440 | < th | dose independent | rect. | 10 | 3 |
| 400 | 168.18 | radiation | 30 | 1440 | > th | dose independent | rect. | 15 | 1 |
| 413 | 168.21 | temperature | 30 | 1440 | > th | dose independent | rect. | 9 | 10 |
| 434 | 168.23 | temperature | 30 | 1440 | < th | dose independent | sin | 11 | NA |
| 437 | 168.26 | temperature | 30 | 1440 | > th | dose independent | sin | 12 | NA |
| 456 | 168.27 | temperature | 30 | 1440 | < th | dose independent | rect. | 9 | 15 |
| 457 | 168.27 | temperature | 30 | 1440 | < th | dose independent | rect. | 9 | 18 |
| 465 | 168.29 | temperature | 30 | 1440 | < th | dose independent | rect. | 9 | 10 |
| 522 | 168.55 | temperature | 30 | 1440 | > th | dose independent | no | NA | NA |
| 643 | 168.56 | temperature | 30 | 1440 | < th | dose independent | rect. | 2 | 22 |
| 649 | 168.56 | temperature | 30 | 1440 | < th | dose independent | rect. | 21 | 23 |
| 651 | 168.57 | temperature | 30 | 1440 | < th | dose independent | no | NA | NA |
| 659 | 168.57 | temperature | 30 | 1440 | < th | dose independent | rect. | 2 | 18 |
| 667 | 168.57 | temperature | 30 | 1440 | < th | dose independent | rect. | 22 | 21 |
| 738 | 168.69 | radiation | 30 | 1440 | > th | dose dependent | rect. | 15 | 2 |
| 762 | 168.77 | temperature | 25 | 1440 | > th | dose dependent | rect. | 18 | 1 |
| 813 | 169.07 | temperature | 30 | 1440 | < th | dose independent | rect. | 21 | 16 |
| 821 | 169.10 | temperature | 30 | 1440 | < th | dose independent | rect. | 2 | 11 |
| 857 | 169.26 | radiation | 30 | 1440 | < th | dose dependent | sin | 12 | NA |