BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os12g0605100 Os12g0605100|AK106406
         (472 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os12g0605100  Conserved hypothetical protein                      562   e-160
Os03g0637900  Conserved hypothetical protein                      209   2e-54

>Os12g0605100 Conserved hypothetical protein
          Length = 472

 Score =  562 bits (1449), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 309/472 (65%), Positives = 309/472 (65%)

Query: 1   RRDTKLLKSGRKSQQESTVNIEQRKEIDHAGLEKSNELLREKLHKLQSEVQALRSKEQPV 60
           RRDTKLLKSGRKSQQESTVNIEQRKEIDHAGLEKSNELLREKLHKLQSEVQALRSKEQPV
Sbjct: 1   RRDTKLLKSGRKSQQESTVNIEQRKEIDHAGLEKSNELLREKLHKLQSEVQALRSKEQPV 60

Query: 61  IDVKSCDAEITKLLTNMQMATANAALFKEKVLELIASCESFEISEMVQKEVLKEEITRRN 120
           IDVKSCDAEITKLLTNMQMATANAALFKEKVLELIASCESFEISEMVQKEVLKEEITRRN
Sbjct: 61  IDVKSCDAEITKLLTNMQMATANAALFKEKVLELIASCESFEISEMVQKEVLKEEITRRN 120

Query: 121 SYVNALKDKLNAVEIENSRLKVDLNGDFTLLGALQTEVSALEKQTMSLAKDCLPSNKLRM 180
           SYVNALKDKLNAVEIENSRLKVDLNGDFTLLGALQTEVSALEKQTMSLAKDCLPSNKLRM
Sbjct: 121 SYVNALKDKLNAVEIENSRLKVDLNGDFTLLGALQTEVSALEKQTMSLAKDCLPSNKLRM 180

Query: 181 EEFSVSPQLSKIAVKPIHGEPNATKMVKDMELEKLHGTIKALQKVVTDTGVVLEQERLDF 240
           EEFSVSPQLSKIAVKPIHGEPNATKMVKDMELEKLHGTIKALQKVVTDTGVVLEQERLDF
Sbjct: 181 EEFSVSPQLSKIAVKPIHGEPNATKMVKDMELEKLHGTIKALQKVVTDTGVVLEQERLDF 240

Query: 241 NANXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRRLLKDIQLDLVQXXXXXXXX 300
           NAN                                    RRLLKDIQLDLVQ        
Sbjct: 241 NANLLDARRQIDLLRLRDDMAAAVDDSDAASDPAAAAYDRRLLKDIQLDLVQTTTPTNRS 300

Query: 301 XXXXXXXXXXXXXXXXXXXXNGGSTEAPPLGLWSVVRASXXXXXXXXXXXXXXXXXXXXX 360
                               NGGSTEAPPLGLWSVVRAS                     
Sbjct: 301 RAATATATAAASSQRHHRRRNGGSTEAPPLGLWSVVRASRRRQQEEGGDGDDDDLQPQPA 360

Query: 361 XXXXXCPQDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 420
                CPQD                                                   
Sbjct: 361 QDPRACPQDVGEDRAARAGDAALPARAAPPRGGARHPPRRRRRGDGGGEQRQVVRRRAAA 420

Query: 421 XXXXXXXXXPLXXXXXXXXXXXXXVVLHESQGHRRLTLIKNLHGWMDKARSV 472
                    PL             VVLHESQGHRRLTLIKNLHGWMDKARSV
Sbjct: 421 IVEGAAGGVPLRAPARQPPAAARAVVLHESQGHRRLTLIKNLHGWMDKARSV 472



>Os03g0637900 Conserved hypothetical protein
          Length = 430

 Score =  209 bits (533), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 106/138 (76%), Positives = 120/138 (86%), Gaps = 1/138 (0%)

Query: 106 MVQKEVLKEEITRRNSYVNALKDKLNAVEIENSRLKVDLNGDFTLLGALQTEVSALEKQT 165
           MVQKEVLKEEITRRNSYV+ LKDKLNAVEIEN RLKVDLNGDFT+LG+LQ EVSALEKQT
Sbjct: 1   MVQKEVLKEEITRRNSYVDELKDKLNAVEIENRRLKVDLNGDFTVLGSLQNEVSALEKQT 60

Query: 166 MSLAKDCLPSNKLRMEEFSVSPQLSKIAVKPIHGEPNATKMVKDMELEKLHGTIKALQKV 225
           +SLA DCL SNKLRMEE ++S Q+ K  ++   G+ N  + VKDMEL+KLHGTIKALQKV
Sbjct: 61  LSLANDCLQSNKLRMEENALSTQVLKTNMRS-SGDQNTVRTVKDMELQKLHGTIKALQKV 119

Query: 226 VTDTGVVLEQERLDFNAN 243
           VTDT V+L+QERLDFNAN
Sbjct: 120 VTDTAVLLDQERLDFNAN 137



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.313    0.129    0.347 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 8,392,680
Number of extensions: 237063
Number of successful extensions: 890
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 887
Number of HSP's successfully gapped: 2
Length of query: 472
Length of database: 17,035,801
Length adjustment: 105
Effective length of query: 367
Effective length of database: 11,553,331
Effective search space: 4240072477
Effective search space used: 4240072477
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 158 (65.5 bits)