BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os12g0605100 Os12g0605100|AK106406
         (472 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G22790.1  | chr3:8052446-8057888 REVERSE LENGTH=1729            49   9e-06

>AT3G22790.1 | chr3:8052446-8057888 REVERSE LENGTH=1729
          Length = 1728

 Score = 48.5 bits (114), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 32/113 (28%), Positives = 57/113 (50%), Gaps = 11/113 (9%)

Query: 67   DAEITKLLTNMQMATANAALFKEKVLELIASCESFEISEMVQKEVLKEEITRRNSYVNAL 126
            DAE T    ++Q++     L + KV EL   CE+           LK+E   + + +N +
Sbjct: 1271 DAEATSFYFDLQISAVREVLLENKVQELTGVCEN-----------LKDEAVTKTTEINQI 1319

Query: 127  KDKLNAVEIENSRLKVDLNGDFTLLGALQTEVSALEKQTMSLAKDCLPSNKLR 179
            K+ +  +E E S LK  L+    ++ +L  +V +LE+  +SL K  +P+ + R
Sbjct: 1320 KETVGFLEFEVSELKTQLSAYDPVVASLAEDVRSLEQNALSLMKLPVPAGRRR 1372



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.313    0.129    0.347 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 5,663,245
Number of extensions: 178273
Number of successful extensions: 877
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 879
Number of HSP's successfully gapped: 3
Length of query: 472
Length of database: 11,106,569
Length adjustment: 102
Effective length of query: 370
Effective length of database: 8,310,137
Effective search space: 3074750690
Effective search space used: 3074750690
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 113 (48.1 bits)