BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0626600 Os03g0626600|AK066665
(491 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os03g0626600 Ubiquitin interacting motif domain containing ... 956 0.0
Os12g0596800 Ubiquitin interacting motif domain containing ... 752 0.0
Os06g0182500 Ubiquitin interacting motif domain containing ... 620 e-178
Os03g0267800 LIM, zinc-binding domain containing protein 498 e-141
>Os03g0626600 Ubiquitin interacting motif domain containing protein
Length = 491
Score = 956 bits (2472), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 462/491 (94%), Positives = 462/491 (94%)
Query: 1 MGWLSKIFKGSVNRVSRGHYNGNTHEGHSAWHTKAYEHDSDHEDIDRAIALSLSEEDQRK 60
MGWLSKIFKGSVNRVSRGHYNGNTHEGHSAWHTKAYEHDSDHEDIDRAIALSLSEEDQRK
Sbjct: 1 MGWLSKIFKGSVNRVSRGHYNGNTHEGHSAWHTKAYEHDSDHEDIDRAIALSLSEEDQRK 60
Query: 61 GKAVDEVDIDHRLHEDEQLARALQESLNDEPPRQNVPVKDVHSESTPATFMPPYIFPSTG 120
GKAVDEVDIDHRLHEDEQLARALQESLNDEPPRQNVPVKDVHSESTPATFMPPYIFPSTG
Sbjct: 61 GKAVDEVDIDHRLHEDEQLARALQESLNDEPPRQNVPVKDVHSESTPATFMPPYIFPSTG 120
Query: 121 LRVCAGCKTPIGQGRFLSCMDSVWHPQCFRCFACDRPISEYEFAVHEGNPYHRSCYKELF 180
LRVCAGCKTPIGQGRFLSCMDSVWHPQCFRCFACDRPISEYEFAVHEGNPYHRSCYKELF
Sbjct: 121 LRVCAGCKTPIGQGRFLSCMDSVWHPQCFRCFACDRPISEYEFAVHEGNPYHRSCYKELF 180
Query: 181 HPKCDVCKNFIPTNKDGHIEYRAHPFWMQKYCPAHETDRTPRCCSCERMEPKDSKYITLD 240
HPKCDVCKNFIPTNKDGHIEYRAHPFWMQKYCPAHETDRTPRCCSCERMEPKDSKYITLD
Sbjct: 181 HPKCDVCKNFIPTNKDGHIEYRAHPFWMQKYCPAHETDRTPRCCSCERMEPKDSKYITLD 240
Query: 241 DGRKLCLECLNTSIMDTDECQPLYIDIQEFYEGLNMKVEQQIPLLLVERQALNEAMEAEK 300
DGRKLCLECLNTSIMDTDECQPLYIDIQEFYEGLNMKVEQQIPLLLVERQALNEAMEAEK
Sbjct: 241 DGRKLCLECLNTSIMDTDECQPLYIDIQEFYEGLNMKVEQQIPLLLVERQALNEAMEAEK 300
Query: 301 TGHHLAETRGLCLSEEQIVRTILRRPVIGPGNKIVDMITGPYKLVRRCEVTAILILYGLP 360
TGHHLAETRGLCLSEEQIVRTILRRPVIGPGNKIVDMITGPYKLVRRCEVTAILILYGLP
Sbjct: 301 TGHHLAETRGLCLSEEQIVRTILRRPVIGPGNKIVDMITGPYKLVRRCEVTAILILYGLP 360
Query: 361 RLLTGSILAHEMMHAYLRLKGYQTLDPKVEEGICQVLAHMWLEXXXXXXXXXXXXXXXXX 420
RLLTGSILAHEMMHAYLRLKGYQTLDPKVEEGICQVLAHMWLE
Sbjct: 361 RLLTGSILAHEMMHAYLRLKGYQTLDPKVEEGICQVLAHMWLESEITSGSSSIIASIAAS 420
Query: 421 XXXXXXXXXXXXKKGVQTDFEKKLGEFFKHQIETDPSDVYGDGFRDGIKAVERYGLRKTL 480
KKGVQTDFEKKLGEFFKHQIETDPSDVYGDGFRDGIKAVERYGLRKTL
Sbjct: 421 SSSSSSSSAPSSKKGVQTDFEKKLGEFFKHQIETDPSDVYGDGFRDGIKAVERYGLRKTL 480
Query: 481 DHMKLTGVFPC 491
DHMKLTGVFPC
Sbjct: 481 DHMKLTGVFPC 491
>Os12g0596800 Ubiquitin interacting motif domain containing protein
Length = 486
Score = 752 bits (1941), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 363/491 (73%), Positives = 406/491 (82%), Gaps = 7/491 (1%)
Query: 1 MGWLSKIFKGSVNRVSRGHYNGNTHEGHSAWHTKAYEHDSDHEDIDRAIALSLSEEDQRK 60
MGWL+KIFKGSVNRVSRGHY+G+ HEGHS+ + + +SD+EDIDRAIALSLSEE Q K
Sbjct: 1 MGWLNKIFKGSVNRVSRGHYDGSWHEGHSSDNARGAYDESDNEDIDRAIALSLSEE-QNK 59
Query: 61 GKAVDEVDIDHRLHEDEQLARALQESLN-DEPPRQNVPVKDVHSESTPATFMPPYIFPST 119
GKAVD ID+ L EDEQLARALQESLN D PPRQN+PV++V SE P +PP +F S+
Sbjct: 60 GKAVD---IDYNLEEDEQLARALQESLNADSPPRQNIPVENVPSE--PPRELPPILFASS 114
Query: 120 GLRVCAGCKTPIGQGRFLSCMDSVWHPQCFRCFACDRPISEYEFAVHEGNPYHRSCYKEL 179
G R CAGCK PIG GRFLSCMDSVWHPQCFRCFAC++PISEYEFA+HE PYH+SCYK+
Sbjct: 115 GSRTCAGCKNPIGHGRFLSCMDSVWHPQCFRCFACNKPISEYEFAMHEDQPYHKSCYKDF 174
Query: 180 FHPKCDVCKNFIPTNKDGHIEYRAHPFWMQKYCPAHETDRTPRCCSCERMEPKDSKYITL 239
FHPKCDVCKNFIPTN++G IEYRAHPFWMQKYCP+HE D TPRCCSCERMEP D KYITL
Sbjct: 175 FHPKCDVCKNFIPTNRNGLIEYRAHPFWMQKYCPSHEDDGTPRCCSCERMEPMDIKYITL 234
Query: 240 DDGRKLCLECLNTSIMDTDECQPLYIDIQEFYEGLNMKVEQQIPLLLVERQALNEAMEAE 299
DDGRKLCLECLN+SIMDT ECQ LY+DIQEF+EGLNMKVEQQ+P+LLVERQALNEA+E E
Sbjct: 235 DDGRKLCLECLNSSIMDTPECQQLYMDIQEFFEGLNMKVEQQVPILLVERQALNEALETE 294
Query: 300 KTGHHLAETRGLCLSEEQIVRTILRRPVIGPGNKIVDMITGPYKLVRRCEVTAILILYGL 359
K GHHL ETRGLCLSEEQIVRTILRRP+IGPGN+I+DMIT PYKL RRCEVTAILILYGL
Sbjct: 295 KNGHHLPETRGLCLSEEQIVRTILRRPIIGPGNRIIDMITAPYKLERRCEVTAILILYGL 354
Query: 360 PRLLTGSILAHEMMHAYLRLKGYQTLDPKVEEGICQVLAHMWLEXXXXXXXXXXXXXXXX 419
PRL TGSILAHEMMHAYLRLKG+++L P+VEEGICQVL+HMWLE
Sbjct: 355 PRLQTGSILAHEMMHAYLRLKGFRSLSPQVEEGICQVLSHMWLESEIIFGSSIDISATSV 414
Query: 420 XXXXXXXXXXXXXKKGVQTDFEKKLGEFFKHQIETDPSDVYGDGFRDGIKAVERYGLRKT 479
KKG +T+FEKKLG F KHQIETD S+ YGDGFR +AVE YGLR T
Sbjct: 415 ASSSSSSSTPTTSKKGAKTEFEKKLGAFIKHQIETDSSEAYGDGFRAANRAVESYGLRST 474
Query: 480 LDHMKLTGVFP 490
L+HMK+TG FP
Sbjct: 475 LNHMKMTGSFP 485
>Os06g0182500 Ubiquitin interacting motif domain containing protein
Length = 486
Score = 620 bits (1598), Expect = e-178, Method: Compositional matrix adjust.
Identities = 308/500 (61%), Positives = 378/500 (75%), Gaps = 25/500 (5%)
Query: 1 MGWLSKIFKGSVNRVSRGHYNGNTHEGHSAWHTKAYE-------HDSDHEDIDRAIALSL 53
MGWL+K F+GS +++S G Y+ E + W+ + + D+EDI RAI+LSL
Sbjct: 1 MGWLTKFFRGSTHKISEGQYHSKPAE-ETIWNGPSNSAVVTDVPSEFDNEDIARAISLSL 59
Query: 54 SEEDQRKGKAVDEVDIDHRLHEDEQLARALQESLNDE-PPRQNVPVKDVHSESTPATFMP 112
EE+QRK KA+++ D L EDEQLARA+QESLN E PPR ++ + + + P
Sbjct: 60 LEEEQRKAKAIEK---DMHLEEDEQLARAIQESLNVESPPR----ARENGNANGGNMYQP 112
Query: 113 -PYIFPSTGLRVCAGCKTPIGQGRFLSCMDSVWHPQCFRCFACDRPISEYEFAVHEGNPY 171
P++F S+G R CAGC + IG GRFLSCM +VWHP+CFRC AC++PI +YEF++ +PY
Sbjct: 113 LPFMF-SSGFRTCAGCHSEIGHGRFLSCMGAVWHPECFRCHACNQPIYDYEFSMSGNHPY 171
Query: 172 HRSCYKELFHPKCDVCKNFIPTNKDGHIEYRAHPFWMQKYCPAHETDRTPRCCSCERMEP 231
H++CYKE FHPKCDVCK FIPTN +G IEYRAHPFW+QKYCP+HE D TPRCCSCERMEP
Sbjct: 172 HKTCYKERFHPKCDVCKQFIPTNMNGLIEYRAHPFWLQKYCPSHEVDGTPRCCSCERMEP 231
Query: 232 KDSKYITLDDGRKLCLECLNTSIMDTDECQPLYIDIQEFYEGLNMKVEQQIPLLLVERQA 291
++S+Y+ LDDGRKLCLECL++++MDT ECQPLY++IQEFYEGLNMKVEQQ+PLLLVERQA
Sbjct: 232 RESRYVLLDDGRKLCLECLDSAVMDTSECQPLYLEIQEFYEGLNMKVEQQVPLLLVERQA 291
Query: 292 LNEAMEAEKTG-HHLAETRGLCLSEEQIVRTILRRPVIGPGNKIVDMITGPYKLVRRCEV 350
LNEAME EKTG HHL ETRGLCLSEEQ V TILRRP + GNK+++MIT PY+L RRCEV
Sbjct: 292 LNEAMEGEKTGHHHLPETRGLCLSEEQTVSTILRRPRMA-GNKVMEMITEPYRLTRRCEV 350
Query: 351 TAILILYGLPRLLTGSILAHEMMHAYLRLKGYQTLDPKVEEGICQVLAHMWLEXXXXXXX 410
TAILILYGLPRLLTGSILAHEMMHA+LRLKGY+TL P VEEGICQVLAHMW+E
Sbjct: 351 TAILILYGLPRLLTGSILAHEMMHAWLRLKGYRTLSPDVEEGICQVLAHMWIESEIIAGS 410
Query: 411 XXXXXXXXXXXXXXXXXXXXXXKKGVQTDFEKKLGEFFKHQIETDPSDVYGDGFRDGIKA 470
++ FE+KLG+FFKHQIE+D S YGDGFR G +A
Sbjct: 411 GSNGASTSSSSSASTSSKKGG-----RSQFERKLGDFFKHQIESDTSMAYGDGFRAGNRA 465
Query: 471 VERYGLRKTLDHMKLTGVFP 490
V +YGL++TL+H++LTG FP
Sbjct: 466 VLQYGLKRTLEHIRLTGTFP 485
>Os03g0267800 LIM, zinc-binding domain containing protein
Length = 501
Score = 498 bits (1281), Expect = e-141, Method: Compositional matrix adjust.
Identities = 243/417 (58%), Positives = 297/417 (71%), Gaps = 14/417 (3%)
Query: 76 DEQLARALQESLNDEPPRQNVPVKDVHSESTPATFMPPYIFPSTGLRVCAGCKTPIGQGR 135
DE+LARA+Q+SLN P + P +++ S G RVC GCK IG G
Sbjct: 96 DEELARAIQDSLNMNPYQPYNPCAPSQTQAR-----------SRGYRVCGGCKHEIGHGH 144
Query: 136 FLSCMDSVWHPQCFRCFACDRPISEYEFAVHEGNPYHRSCYKELFHPKCDVCKNFIPTNK 195
+LSC+ WHPQCFRC +C PI E EF + +PYH+ CYKEL HPKCDVC FIPTN+
Sbjct: 145 YLSCLGMYWHPQCFRCSSCRHPIREMEFTLLGTDPYHKLCYKELHHPKCDVCLQFIPTNR 204
Query: 196 DGHIEYRAHPFWMQKYCPAHETDRTPRCCSCERMEPKDSKYITLDDGRKLCLECLNTSIM 255
G IEYRAHPFW QKYCP HE DRTPRCCSCE+MEP+++KY++L DGR LC+ECL+++IM
Sbjct: 205 TGLIEYRAHPFWGQKYCPLHEHDRTPRCCSCEKMEPRNTKYMSLGDGRSLCMECLDSAIM 264
Query: 256 DTDECQPLYIDIQEFYEGLNMKVEQQIPLLLVERQALNEAMEAEKTG-HHLAETRGLCLS 314
DT ECQPLY I+++YEG+NMK++QQIP+LLVERQALNEAME E G HH+ ETRGLCLS
Sbjct: 265 DTGECQPLYHSIRDYYEGMNMKLDQQIPMLLVERQALNEAMEGESKGPHHMPETRGLCLS 324
Query: 315 EEQIVRTILRRPVIGPGNKIVDMITGPYKLVRRCEVTAILILYGLPRLLTGSILAHEMMH 374
EEQ V +ILRRP IG N+++DM T P KL RRCEVTAIL+L+GLPRLLTGSILAHE+MH
Sbjct: 325 EEQTVTSILRRPRIG-ANRLLDMKTQPQKLTRRCEVTAILVLFGLPRLLTGSILAHELMH 383
Query: 375 AYLRLKGYQTLDPKVEEGICQVLAHMWLEXXXX-XXXXXXXXXXXXXXXXXXXXXXXXXK 433
+LRLKGY+ L ++EEGICQV++++WLE K
Sbjct: 384 GWLRLKGYRNLKAEIEEGICQVMSYLWLESEILPSTSRYGQASTSYASSSSSSCRPPPSK 443
Query: 434 KGVQTDFEKKLGEFFKHQIETDPSDVYGDGFRDGIKAVERYGLRKTLDHMKLTGVFP 490
KG + EKKLGEFF HQI D S YGDGFR AV +YGLR++L+H++LTG FP
Sbjct: 444 KGGISHTEKKLGEFFLHQIANDTSSAYGDGFRAAYAAVNKYGLRQSLNHIRLTGGFP 500
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.321 0.138 0.440
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 17,563,004
Number of extensions: 765866
Number of successful extensions: 1747
Number of sequences better than 1.0e-10: 4
Number of HSP's gapped: 1723
Number of HSP's successfully gapped: 5
Length of query: 491
Length of database: 17,035,801
Length adjustment: 105
Effective length of query: 386
Effective length of database: 11,553,331
Effective search space: 4459585766
Effective search space used: 4459585766
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 158 (65.5 bits)